This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1tja

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:40, 14 February 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1tja.png|left|200px]]
 
-
{{STRUCTURE_1tja| PDB=1tja | SCENE= }}
+
==Fitting of gp8, gp9, and gp11 into the cryo-EM reconstruction of the bacteriophage T4 contracted tail==
-
 
+
<SX load='1tja' size='340' side='right' viewer='molstar' caption='[[1tja]], [[Resolution|resolution]] 16.00&Aring;' scene=''>
-
===Fitting of gp8, gp9, and gp11 into the cryo-EM reconstruction of the bacteriophage T4 contracted tail===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1tja]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T4 Escherichia virus T4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TJA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1TJA FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_15315755}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 16&#8491;</td></tr>
-
 
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1tja FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tja OCA], [https://pdbe.org/1tja PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1tja RCSB], [https://www.ebi.ac.uk/pdbsum/1tja PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1tja ProSAT]</span></td></tr>
-
==About this Structure==
+
</table>
-
[[1tja]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_t4 Enterobacteria phage t4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TJA OCA].
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/BP08_BPT4 BP08_BPT4] Baseplate protein that is part of the baseplate wedge. Involved in the tail assembly.<ref>PMID:15315755</ref> <ref>PMID:21129200</ref>
-
==Reference==
+
== Evolutionary Conservation ==
-
<ref group="xtra">PMID:015315755</ref><references group="xtra"/>
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Enterobacteria phage t4]]
+
Check<jmol>
-
[[Category: Chipman, P R.]]
+
<jmolCheckbox>
-
[[Category: Kostyuchenko, V A.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/tj/1tja_consurf.spt"</scriptWhenChecked>
-
[[Category: Leiman, P G.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Mesyanzhinov, V V.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Rossmann, M G.]]
+
</jmolCheckbox>
-
[[Category: Circular symmetry]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1tja ConSurf].
-
[[Category: Cryo-em]]
+
<div style="clear:both"></div>
-
[[Category: Docking]]
+
== References ==
-
[[Category: Fitting]]
+
<references/>
-
[[Category: Gp11]]
+
__TOC__
-
[[Category: Gp8]]
+
</SX>
-
[[Category: Gp9]]
+
[[Category: Escherichia virus T4]]
-
[[Category: Viral protein]]
+
[[Category: Large Structures]]
 +
[[Category: Chipman PR]]
 +
[[Category: Kostyuchenko VA]]
 +
[[Category: Leiman PG]]
 +
[[Category: Mesyanzhinov VV]]
 +
[[Category: Rossmann MG]]

Current revision

Fitting of gp8, gp9, and gp11 into the cryo-EM reconstruction of the bacteriophage T4 contracted tail

1tja, resolution 16.00Å

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1tja"
Personal tools