This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1urp

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:45, 14 February 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1urp.png|left|200px]]
 
-
{{STRUCTURE_1urp| PDB=1urp | SCENE= }}
+
==D-RIBOSE-BINDING PROTEIN FROM ESCHERICHIA COLI==
-
 
+
<StructureSection load='1urp' size='340' side='right'caption='[[1urp]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-
===D-RIBOSE-BINDING PROTEIN FROM ESCHERICHIA COLI===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1urp]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1URP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1URP FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_9641984}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-
 
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1urp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1urp OCA], [https://pdbe.org/1urp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1urp RCSB], [https://www.ebi.ac.uk/pdbsum/1urp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1urp ProSAT]</span></td></tr>
-
==About this Structure==
+
</table>
-
[[1urp]] is a 4 chain structure of [[Ribose-binding protein]] with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_k12 Escherichia coli k12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1URP OCA].
+
== Function ==
 +
[https://www.uniprot.org/uniprot/RBSB_ECOLI RBSB_ECOLI] Involved in the high-affinity D-ribose membrane transport system and also serves as the primary chemoreceptor for chemotaxis.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ur/1urp_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1urp ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Molecular Playground/RBP|Molecular Playground/RBP]]
 
*[[Ribose-binding protein|Ribose-binding protein]]
*[[Ribose-binding protein|Ribose-binding protein]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:009641984</ref><references group="xtra"/>
+
[[Category: Escherichia coli K-12]]
-
[[Category: Escherichia coli k12]]
+
[[Category: Large Structures]]
-
[[Category: Bjorkman, A J.]]
+
[[Category: Bjorkman AJ]]
-
[[Category: Mowbray, S L.]]
+
[[Category: Mowbray SL]]
-
[[Category: Chemotaxis]]
+
-
[[Category: Transport]]
+

Current revision

D-RIBOSE-BINDING PROTEIN FROM ESCHERICHIA COLI

PDB ID 1urp

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools