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1vqb

From Proteopedia

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{{Seed}}
 
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[[Image:1vqb.png|left|200px]]
 
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==GENE V PROTEIN (SINGLE-STRANDED DNA BINDING PROTEIN)==
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The line below this paragraph, containing "STRUCTURE_1vqb", creates the "Structure Box" on the page.
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<StructureSection load='1vqb' size='340' side='right'caption='[[1vqb]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1vqb]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterobacteria_phage_f1 Enterobacteria phage f1]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1bgh 1bgh]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VQB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VQB FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vqb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vqb OCA], [https://pdbe.org/1vqb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vqb RCSB], [https://www.ebi.ac.uk/pdbsum/1vqb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vqb ProSAT]</span></td></tr>
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{{STRUCTURE_1vqb| PDB=1vqb | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/G5P_BPF1 G5P_BPF1] Binds to DNA in a highly cooperative manner without pronounced sequence specificity. During synthesis of the single-stranded (progeny) viral DNA, prevents the conversion into the double-stranded replicative form. G5P is displaced by the capsid protein G8P during phage assembly on the inner bacterial membrane (By similarity).
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vq/1vqb_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vqb ConSurf].
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<div style="clear:both"></div>
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===GENE V PROTEIN (SINGLE-STRANDED DNA BINDING PROTEIN)===
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==See Also==
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*[[Single-stranded DNA-binding protein 3D structures|Single-stranded DNA-binding protein 3D structures]]
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__TOC__
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<!--
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</StructureSection>
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The line below this paragraph, {{ABSTRACT_PUBMED_8134350}}, adds the Publication Abstract to the page
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(as it appears on PubMed at http://www.pubmed.gov), where 8134350 is the PubMed ID number.
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-->
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{{ABSTRACT_PUBMED_8134350}}
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==About this Structure==
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1VQB is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_f1 Enterobacteria phage f1]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1bgh 1bgh]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VQB OCA].
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==Reference==
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<ref group="xtra">PMID:8134350</ref><references group="xtra"/>
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[[Category: Enterobacteria phage f1]]
[[Category: Enterobacteria phage f1]]
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[[Category: Bellamy, H.]]
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[[Category: Large Structures]]
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[[Category: Gray, C W.]]
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[[Category: Bellamy H]]
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[[Category: Guan, Y.]]
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[[Category: Gray CW]]
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[[Category: Konings, R N.H.]]
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[[Category: Guan Y]]
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[[Category: Leschnitzer, D H.]]
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[[Category: Konings RNH]]
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[[Category: Skinner, M M.]]
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[[Category: Leschnitzer DH]]
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[[Category: Sweet, R M.]]
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[[Category: Skinner MM]]
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[[Category: Terwilliger, T C.]]
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[[Category: Sweet RM]]
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[[Category: Wang, A H.J.]]
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[[Category: Terwilliger TC]]
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[[Category: Zhang, H.]]
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[[Category: Wang AH-J]]
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[[Category: Dna-binding protein]]
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[[Category: Zhang H]]
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[[Category: Gene v]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 12:18:01 2009''
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Current revision

GENE V PROTEIN (SINGLE-STRANDED DNA BINDING PROTEIN)

PDB ID 1vqb

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