This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1xg7

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:50, 14 February 2024) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1xg7.jpg|left|200px]]
 
-
{{Structure
+
==Conserved hypothetical protein Pfu-877259-001 from Pyrococcus furiosus==
-
|PDB= 1xg7 |SIZE=350|CAPTION= <scene name='initialview01'>1xg7</scene>, resolution 1.88&Aring;
+
<StructureSection load='1xg7' size='340' side='right'caption='[[1xg7]], [[Resolution|resolution]] 1.88&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[1xg7]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus_DSM_3638 Pyrococcus furiosus DSM 3638]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XG7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XG7 FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.88&#8491;</td></tr>
-
|GENE=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xg7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xg7 OCA], [https://pdbe.org/1xg7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xg7 RCSB], [https://www.ebi.ac.uk/pdbsum/1xg7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xg7 ProSAT], [https://www.topsan.org/Proteins/SECSG/1xg7 TOPSAN]</span></td></tr>
-
}}
+
</table>
-
 
+
== Function ==
-
'''Conserved hypothetical protein Pfu-877259-001 from Pyrococcus furiosus'''
+
[https://www.uniprot.org/uniprot/AGOG_PYRFU AGOG_PYRFU] DNA repair enzyme that is part of the base excision repair (BER) pathway; protects from oxidative damage by removing the major product of DNA oxidation, 8-oxoguanine (GO), from single- and double-stranded DNA substrates (By similarity).
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
1XG7 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus_dsm_3638 Pyrococcus furiosus dsm 3638]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XG7 OCA].
+
<jmolCheckbox>
-
[[Category: Pyrococcus furiosus dsm 3638]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xg/1xg7_consurf.spt"</scriptWhenChecked>
-
[[Category: Single protein]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Adams, M W.W.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Chang, J.]]
+
</jmolCheckbox>
-
[[Category: Chang, S H.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1xg7 ConSurf].
-
[[Category: Chen, C Y.]]
+
<div style="clear:both"></div>
-
[[Category: Chen, L.]]
+
__TOC__
-
[[Category: Eneh, J C.]]
+
</StructureSection>
-
[[Category: Habel, J.]]
+
[[Category: Large Structures]]
-
[[Category: Hopkins, R C.]]
+
[[Category: Pyrococcus furiosus DSM 3638]]
-
[[Category: Horanyi, P.]]
+
[[Category: Adams MWW]]
-
[[Category: II, F L.Poole.]]
+
[[Category: Arendall III WB]]
-
[[Category: III, W B.Arendall.]]
+
[[Category: Chang J]]
-
[[Category: Jr., F E.Jenney.]]
+
[[Category: Chang S-H]]
-
[[Category: Lee, D.]]
+
[[Category: Chen C-Y]]
-
[[Category: Lee, H S.]]
+
[[Category: Chen L]]
-
[[Category: Li, T.]]
+
[[Category: Eneh JC]]
-
[[Category: Lin, D.]]
+
[[Category: Habel J]]
-
[[Category: Liu, Z J.]]
+
[[Category: Hopkins RC]]
-
[[Category: Richardson, D C.]]
+
[[Category: Horanyi P]]
-
[[Category: Richardson, J S.]]
+
[[Category: Jenney Jr FE]]
-
[[Category: Rose, J P.]]
+
[[Category: Lee D]]
-
[[Category: SECSG, Southeast Collaboratory for Structural Genomics.]]
+
[[Category: Lee H-S]]
-
[[Category: Shah, C.]]
+
[[Category: Li T]]
-
[[Category: Sugar, F J.]]
+
[[Category: Lin D]]
-
[[Category: Tempel, W.]]
+
[[Category: Liu Z-J]]
-
[[Category: Wang, B C.]]
+
[[Category: Poole II FL]]
-
[[Category: Xu, H.]]
+
[[Category: Richardson DC]]
-
[[Category: Yang, H.]]
+
[[Category: Richardson JS]]
-
[[Category: Zhao, M.]]
+
[[Category: Rose JP]]
-
[[Category: Zhou, W.]]
+
[[Category: Shah C]]
-
[[Category: conserved hypothetical protein]]
+
[[Category: Sugar FJ]]
-
[[Category: hyperthermophile]]
+
[[Category: Tempel W]]
-
[[Category: protein structure initiative]]
+
[[Category: Wang B-C]]
-
[[Category: psi]]
+
[[Category: Xu H]]
-
[[Category: pyrococcus furiosus]]
+
[[Category: Yang H]]
-
[[Category: secsg]]
+
[[Category: Zhao M]]
-
[[Category: southeast collaboratory for structural genomic]]
+
[[Category: Zhou W]]
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 15:09:25 2008''
+

Current revision

Conserved hypothetical protein Pfu-877259-001 from Pyrococcus furiosus

PDB ID 1xg7

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1xg7"
Personal tools