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1y7b

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[[Image:1y7b.gif|left|200px]]
 
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{{Structure
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==BETA-D-XYLOSIDASE, A FAMILY 43 GLYCOSIDE HYDROLASE==
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|PDB= 1y7b |SIZE=350|CAPTION= <scene name='initialview01'>1y7b</scene>, resolution 1.60&Aring;
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<StructureSection load='1y7b' size='340' side='right'caption='[[1y7b]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
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<table><tr><td colspan='2'>[[1y7b]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_acetobutylicum_ATCC_824 Clostridium acetobutylicum ATCC 824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y7B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Y7B FirstGlance]. <br>
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|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Xylan_1,4-beta-xylosidase Xylan 1,4-beta-xylosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.37 3.2.1.37] </span>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
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|GENE= xynD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272562 Clostridium acetobutylicum ATCC 824])
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG3507 XynB], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam04616 Glyco_hydro_43]</span>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1y7b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y7b OCA], [https://pdbe.org/1y7b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1y7b RCSB], [https://www.ebi.ac.uk/pdbsum/1y7b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1y7b ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1y7b TOPSAN]</span></td></tr>
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|RELATEDENTRY=
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</table>
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1y7b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y7b OCA], [http://www.ebi.ac.uk/pdbsum/1y7b PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1y7b RCSB]</span>
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== Function ==
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}}
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[https://www.uniprot.org/uniprot/Q97DM1_CLOAB Q97DM1_CLOAB]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/y7/1y7b_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1y7b ConSurf].
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<div style="clear:both"></div>
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'''BETA-D-XYLOSIDASE, A FAMILY 43 GLYCOSIDE HYDROLASE'''
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==See Also==
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*[[Xylosidase 3D structures|Xylosidase 3D structures]]
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__TOC__
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==About this Structure==
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</StructureSection>
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1Y7B is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Clostridium_acetobutylicum_atcc_824 Clostridium acetobutylicum atcc 824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y7B OCA].
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[[Category: Clostridium acetobutylicum ATCC 824]]
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[[Category: Clostridium acetobutylicum atcc 824]]
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[[Category: Large Structures]]
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[[Category: Single protein]]
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[[Category: Almo SC]]
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[[Category: Xylan 1,4-beta-xylosidase]]
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[[Category: Burley SK]]
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[[Category: Almo, S C.]]
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[[Category: Fedorov E]]
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[[Category: Burley, S K.]]
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[[Category: Gilliland GL]]
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[[Category: Fedorov, E.]]
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[[Category: Teplyakov A]]
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[[Category: Gilliland, G L.]]
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[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
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[[Category: Teplyakov, A.]]
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[[Category: beta-propeller]]
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[[Category: beta-sandwich]]
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[[Category: new york structural genomix research consortium]]
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[[Category: nysgxrc]]
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[[Category: protein structure initative]]
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[[Category: protein structure initiative]]
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[[Category: psi]]
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[[Category: structural genomic]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 00:59:41 2008''
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Current revision

BETA-D-XYLOSIDASE, A FAMILY 43 GLYCOSIDE HYDROLASE

PDB ID 1y7b

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