This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1y80

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:55, 14 February 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1y80.png|left|200px]]
 
-
{{STRUCTURE_1y80| PDB=1y80 | SCENE= }}
+
==Structure of a corrinoid (factor IIIm)-binding protein from Moorella thermoacetica==
-
 
+
<StructureSection load='1y80' size='340' side='right'caption='[[1y80]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-
===Structure of a corrinoid (factor IIIm)-binding protein from Moorella thermoacetica===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1y80]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Moorella_thermoacetica Moorella thermoacetica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y80 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Y80 FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-
==About this Structure==
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=B1M:CO-5-METHOXYBENZIMIDAZOLYLCOBAMIDE'>B1M</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>
-
[[1y80]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Moorella_thermoacetica Moorella thermoacetica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y80 OCA].
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1y80 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y80 OCA], [https://pdbe.org/1y80 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1y80 RCSB], [https://www.ebi.ac.uk/pdbsum/1y80 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1y80 ProSAT], [https://www.topsan.org/Proteins/SECSG/1y80 TOPSAN]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q2RJ67_MOOTA Q2RJ67_MOOTA]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/y8/1y80_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1y80 ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Moorella thermoacetica]]
[[Category: Moorella thermoacetica]]
-
[[Category: Chang, J.]]
+
[[Category: Chang J]]
-
[[Category: Chang, S H.]]
+
[[Category: Chang S-H]]
-
[[Category: Chen, L.]]
+
[[Category: Chen L]]
-
[[Category: Das, A.]]
+
[[Category: Das A]]
-
[[Category: Fu, Z Q.]]
+
[[Category: Fu Z-Q]]
-
[[Category: Habel, J.]]
+
[[Category: Habel J]]
-
[[Category: Lee, D.]]
+
[[Category: Lee D]]
-
[[Category: Liu, Z J.]]
+
[[Category: Liu Z-J]]
-
[[Category: Ljungdahl, L.]]
+
[[Category: Ljungdahl L]]
-
[[Category: Nguyen, D.]]
+
[[Category: Nguyen D]]
-
[[Category: Rose, J P.]]
+
[[Category: Rose JP]]
-
[[Category: SECSG, Southeast Collaboratory for Structural Genomics.]]
+
[[Category: Tempel W]]
-
[[Category: Tempel, W.]]
+
[[Category: Wang B-C]]
-
[[Category: Wang, B C.]]
+
[[Category: Zhou W]]
-
[[Category: Zhou, W.]]
+
-
[[Category: Corrinoid]]
+
-
[[Category: Factor iiim]]
+
-
[[Category: Methyl transferase]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi]]
+
-
[[Category: Secsg]]
+
-
[[Category: Southeast collaboratory for structural genomic]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Unknown function]]
+

Current revision

Structure of a corrinoid (factor IIIm)-binding protein from Moorella thermoacetica

PDB ID 1y80

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1y80"
Personal tools