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1yce

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[[Image:1yce.png|left|200px]]
 
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==Structure of the rotor ring of F-type Na+-ATPase from Ilyobacter tartaricus==
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The line below this paragraph, containing "STRUCTURE_1yce", creates the "Structure Box" on the page.
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<StructureSection load='1yce' size='340' side='right'caption='[[1yce]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1yce]] is a 44 chain structure with sequence from [https://en.wikipedia.org/wiki/Ilyobacter_tartaricus Ilyobacter tartaricus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YCE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YCE FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=F09:NONAN-1-OL'>F09</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
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{{STRUCTURE_1yce| PDB=1yce | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yce FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yce OCA], [https://pdbe.org/1yce PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yce RCSB], [https://www.ebi.ac.uk/pdbsum/1yce PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yce ProSAT]</span></td></tr>
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</table>
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===Structure of the rotor ring of F-type Na+-ATPase from Ilyobacter tartaricus===
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== Function ==
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[https://www.uniprot.org/uniprot/ATPL_ILYTA ATPL_ILYTA] F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane sodium channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to sodium translocation.[HAMAP-Rule:MF_01396] Key component of the F(0) channel; it plays a direct role in translocation across the membrane. A homomeric c-ring of 11 subunits forms the central stalk rotor element with the F(1) delta and epsilon subunits.[HAMAP-Rule:MF_01396]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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(as it appears on PubMed at http://www.pubmed.gov), where 15860619 is the PubMed ID number.
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yc/1yce_consurf.spt"</scriptWhenChecked>
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{{ABSTRACT_PUBMED_15860619}}
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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==About this Structure==
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</jmolCheckbox>
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[[1yce]] is a 44 chain structure of [[ATPase]] with sequence from [http://en.wikipedia.org/wiki/Ilyobacter_tartaricus Ilyobacter tartaricus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YCE OCA].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yce ConSurf].
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<div style="clear:both"></div>
==See Also==
==See Also==
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*[[ATPase]]
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*[[ATPase 3D structures|ATPase 3D structures]]
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__TOC__
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==Reference==
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</StructureSection>
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<ref group="xtra">PMID:15860619</ref><references group="xtra"/>
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[[Category: Ilyobacter tartaricus]]
[[Category: Ilyobacter tartaricus]]
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[[Category: Diederichs, K.]]
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[[Category: Large Structures]]
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[[Category: Dimroth, P.]]
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[[Category: Diederichs K]]
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[[Category: Meier, T.]]
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[[Category: Dimroth P]]
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[[Category: Polzer, P.]]
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[[Category: Meier T]]
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[[Category: Welte, W.]]
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[[Category: Polzer P]]
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[[Category: Atp synthase]]
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[[Category: Welte W]]
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[[Category: Membrane protein]]
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[[Category: Na binding site]]
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Current revision

Structure of the rotor ring of F-type Na+-ATPase from Ilyobacter tartaricus

PDB ID 1yce

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