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1ydg

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{{Seed}}
 
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[[Image:1ydg.png|left|200px]]
 
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==Crystal Structure of Trp repressor binding protein WrbA==
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The line below this paragraph, containing "STRUCTURE_1ydg", creates the "Structure Box" on the page.
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<StructureSection load='1ydg' size='340' side='right'caption='[[1ydg]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1ydg]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Deinococcus_radiodurans Deinococcus radiodurans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YDG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YDG FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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{{STRUCTURE_1ydg| PDB=1ydg | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ydg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ydg OCA], [https://pdbe.org/1ydg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ydg RCSB], [https://www.ebi.ac.uk/pdbsum/1ydg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ydg ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1ydg TOPSAN]</span></td></tr>
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</table>
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===Crystal Structure of Trp repressor binding protein WrbA===
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== Function ==
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[https://www.uniprot.org/uniprot/NQOR_DEIRA NQOR_DEIRA] It seems to function in response to environmental stress when various electron transfer chains are affected or when the environment is highly oxidizing. It reduces quinones to the hydroquinone state to prevent interaction of the semiquinone with O2 and production of superoxide (By similarity).
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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The line below this paragraph, {{ABSTRACT_PUBMED_16322580}}, adds the Publication Abstract to the page
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Check<jmol>
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(as it appears on PubMed at http://www.pubmed.gov), where 16322580 is the PubMed ID number.
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yd/1ydg_consurf.spt"</scriptWhenChecked>
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{{ABSTRACT_PUBMED_16322580}}
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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==About this Structure==
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</jmolCheckbox>
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1YDG is a 8 chains structure of sequences from [http://en.wikipedia.org/wiki/Deinococcus_radiodurans Deinococcus radiodurans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YDG OCA].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ydg ConSurf].
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<div style="clear:both"></div>
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==Reference==
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__TOC__
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Crystal structures of the tryptophan repressor binding protein WrbA and complexes with flavin mononucleotide., Gorman J, Shapiro L, Protein Sci. 2005 Dec;14(12):3004-12. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16322580 16322580]
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</StructureSection>
[[Category: Deinococcus radiodurans]]
[[Category: Deinococcus radiodurans]]
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[[Category: Burley, S K.]]
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[[Category: Large Structures]]
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[[Category: Gorman, J.]]
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[[Category: Burley SK]]
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[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
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[[Category: Gorman J]]
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[[Category: Shapiro, L.]]
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[[Category: Shapiro L]]
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[[Category: New york structural genomix research consortium]]
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[[Category: Nysgxrc]]
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[[Category: Protein structure initiative]]
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[[Category: Psi]]
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[[Category: Structural genomic]]
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[[Category: Tetramer]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 17:08:10 2008''
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Current revision

Crystal Structure of Trp repressor binding protein WrbA

PDB ID 1ydg

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