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1yem
From Proteopedia
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| - | [[Image:1yem.gif|left|200px]]<br /><applet load="1yem" size="350" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="1yem, resolution 2.300Å" /> | ||
| - | '''Conserved hypothetical protein Pfu-838710-001 from Pyrococcus furiosus'''<br /> | ||
| - | == | + | ==Conserved hypothetical protein Pfu-838710-001 from Pyrococcus furiosus== |
| - | + | <StructureSection load='1yem' size='340' side='right'caption='[[1yem]], [[Resolution|resolution]] 2.30Å' scene=''> | |
| - | [ | + | == Structural highlights == |
| - | [ | + | <table><tr><td colspan='2'>[[1yem]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus_DSM_3638 Pyrococcus furiosus DSM 3638]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1xkc 1xkc]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YEM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YEM FirstGlance]. <br> |
| - | [ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3Å</td></tr> |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PT:PLATINUM+(II)+ION'>PT</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr> | |
| - | [ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yem FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yem OCA], [https://pdbe.org/1yem PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yem RCSB], [https://www.ebi.ac.uk/pdbsum/1yem PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yem ProSAT], [https://www.topsan.org/Proteins/SECSG/1yem TOPSAN]</span></td></tr> |
| - | [ | + | </table> |
| - | [ | + | == Function == |
| - | [[ | + | [https://www.uniprot.org/uniprot/Q8U2H2_PYRFU Q8U2H2_PYRFU] |
| - | [ | + | == Evolutionary Conservation == |
| - | [[ | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [ | + | Check<jmol> |
| - | [[Category: | + | <jmolCheckbox> |
| - | [[Category: | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ye/1yem_consurf.spt"</scriptWhenChecked> |
| - | [[Category: | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[Category: | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: | + | </jmolCheckbox> |
| - | [[Category: | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yem ConSurf]. |
| - | [[Category: | + | <div style="clear:both"></div> |
| - | [[Category: | + | __TOC__ |
| - | [[Category: | + | </StructureSection> |
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: | + | [[Category: Pyrococcus furiosus DSM 3638]] |
| - | [[Category: | + | [[Category: Adams MWW]] |
| - | [[Category: | + | [[Category: Arendall III WB]] |
| - | [[Category: | + | [[Category: Chang J]] |
| - | [[Category: | + | [[Category: Chen L]] |
| - | [[Category: | + | [[Category: Jenney Jr FE]] |
| - | [[Category: | + | [[Category: Lee D]] |
| - | [[Category: | + | [[Category: Lin D]] |
| - | [[Category: | + | [[Category: Liu Z-J]] |
| - | + | [[Category: Ng JD]] | |
| - | + | [[Category: Praissman JL]] | |
| + | [[Category: Richardson DC]] | ||
| + | [[Category: Richardson JS]] | ||
| + | [[Category: Rose JP]] | ||
| + | [[Category: Shah A]] | ||
| + | [[Category: Tempel W]] | ||
| + | [[Category: Wang B-C]] | ||
| + | [[Category: Yang H]] | ||
Current revision
Conserved hypothetical protein Pfu-838710-001 from Pyrococcus furiosus
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Categories: Large Structures | Pyrococcus furiosus DSM 3638 | Adams MWW | Arendall III WB | Chang J | Chen L | Jenney Jr FE | Lee D | Lin D | Liu Z-J | Ng JD | Praissman JL | Richardson DC | Richardson JS | Rose JP | Shah A | Tempel W | Wang B-C | Yang H
