This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
1yem
From Proteopedia
(Difference between revisions)
| (One intermediate revision not shown.) | |||
| Line 1: | Line 1: | ||
==Conserved hypothetical protein Pfu-838710-001 from Pyrococcus furiosus== | ==Conserved hypothetical protein Pfu-838710-001 from Pyrococcus furiosus== | ||
| - | <StructureSection load='1yem' size='340' side='right' caption='[[1yem]], [[Resolution|resolution]] 2.30Å' scene=''> | + | <StructureSection load='1yem' size='340' side='right'caption='[[1yem]], [[Resolution|resolution]] 2.30Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[1yem]] is a 2 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[1yem]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus_DSM_3638 Pyrococcus furiosus DSM 3638]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1xkc 1xkc]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YEM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YEM FirstGlance]. <br> |
| - | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3Å</td></tr> |
| - | <tr id=' | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PT:PLATINUM+(II)+ION'>PT</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yem FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yem OCA], [https://pdbe.org/1yem PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yem RCSB], [https://www.ebi.ac.uk/pdbsum/1yem PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yem ProSAT], [https://www.topsan.org/Proteins/SECSG/1yem TOPSAN]</span></td></tr> |
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/Q8U2H2_PYRFU Q8U2H2_PYRFU] | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ye/1yem_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ye/1yem_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
| Line 20: | Line 22: | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: Adams | + | [[Category: Pyrococcus furiosus DSM 3638]] |
| - | [[Category: | + | [[Category: Adams MWW]] |
| - | [[Category: | + | [[Category: Arendall III WB]] |
| - | [[Category: | + | [[Category: Chang J]] |
| - | [[Category: Jenney | + | [[Category: Chen L]] |
| - | [[Category: Lee | + | [[Category: Jenney Jr FE]] |
| - | [[Category: Lin | + | [[Category: Lee D]] |
| - | [[Category: Liu | + | [[Category: Lin D]] |
| - | [[Category: Ng | + | [[Category: Liu Z-J]] |
| - | [[Category: Praissman | + | [[Category: Ng JD]] |
| - | [[Category: Richardson | + | [[Category: Praissman JL]] |
| - | [[Category: Richardson | + | [[Category: Richardson DC]] |
| - | [[Category: Rose | + | [[Category: Richardson JS]] |
| - | + | [[Category: Rose JP]] | |
| - | [[Category: Shah | + | [[Category: Shah A]] |
| - | [[Category: Tempel | + | [[Category: Tempel W]] |
| - | [[Category: Wang | + | [[Category: Wang B-C]] |
| - | [[Category: Yang | + | [[Category: Yang H]] |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Conserved hypothetical protein Pfu-838710-001 from Pyrococcus furiosus
| |||||||||||
Categories: Large Structures | Pyrococcus furiosus DSM 3638 | Adams MWW | Arendall III WB | Chang J | Chen L | Jenney Jr FE | Lee D | Lin D | Liu Z-J | Ng JD | Praissman JL | Richardson DC | Richardson JS | Rose JP | Shah A | Tempel W | Wang B-C | Yang H
