This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1yew

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1yew" [edit=sysop:move=sysop])
Current revision (08:56, 14 February 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1yew.png|left|200px]]
 
-
{{STRUCTURE_1yew| PDB=1yew | SCENE= }}
+
==Crystal structure of particulate methane monooxygenase==
 +
<StructureSection load='1yew' size='340' side='right'caption='[[1yew]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1yew]] is a 9 chain structure with sequence from [https://en.wikipedia.org/wiki/Methylococcus_capsulatus Methylococcus capsulatus] and [https://en.wikipedia.org/wiki/Methylococcus_capsulatus_str._Bath Methylococcus capsulatus str. Bath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YEW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YEW FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.801&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=CUA:DINUCLEAR+COPPER+ION'>CUA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yew FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yew OCA], [https://pdbe.org/1yew PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yew RCSB], [https://www.ebi.ac.uk/pdbsum/1yew PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yew ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/PMOB_METCA PMOB_METCA]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ye/1yew_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yew ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal structure of particulate methane monooxygenase===
+
==See Also==
-
 
+
*[[Methane monooxygenase 3D structures|Methane monooxygenase 3D structures]]
-
{{ABSTRACT_PUBMED_15674245}}
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
[[Category: Large Structures]]
-
[[1yew]] is a 9 chain structure with sequence from [http://en.wikipedia.org/wiki/Methylococcus_capsulatus Methylococcus capsulatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YEW OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:015674245</ref><references group="xtra"/>
+
[[Category: Methylococcus capsulatus]]
[[Category: Methylococcus capsulatus]]
-
[[Category: Lieberman, R L.]]
+
[[Category: Methylococcus capsulatus str. Bath]]
-
[[Category: Rosenzweig, A C.]]
+
[[Category: Lieberman RL]]
-
[[Category: Beta barrel]]
+
[[Category: Rosenzweig AC]]
-
[[Category: Membrane protein]]
+
-
[[Category: Methane]]
+
-
[[Category: Oxidoreductase]]
+

Current revision

Crystal structure of particulate methane monooxygenase

PDB ID 1yew

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools