This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1yg2

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:57, 14 February 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1yg2.png|left|200px]]
 
-
{{STRUCTURE_1yg2| PDB=1yg2 | SCENE= }}
+
==Structure of the Vibrio cholerae virulence activator AphA==
-
 
+
<StructureSection load='1yg2' size='340' side='right'caption='[[1yg2]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
===Structure of the Vibrio cholerae virulence activator AphA===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1yg2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_cholerae Vibrio cholerae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YG2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YG2 FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_15647287}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
 
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yg2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yg2 OCA], [https://pdbe.org/1yg2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yg2 RCSB], [https://www.ebi.ac.uk/pdbsum/1yg2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yg2 ProSAT]</span></td></tr>
-
==About this Structure==
+
</table>
-
[[1yg2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_cholerae Vibrio cholerae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YG2 OCA].
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q9X399_VIBCL Q9X399_VIBCL]
-
==Reference==
+
== Evolutionary Conservation ==
-
<ref group="xtra">PMID:015647287</ref><references group="xtra"/>
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Vibrio cholerae]]
+
Check<jmol>
-
[[Category: Kovacikova, G.]]
+
<jmolCheckbox>
-
[[Category: Kull, F J.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yg/1yg2_consurf.spt"</scriptWhenChecked>
-
[[Category: Lin, W.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Silva, R S.De.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Skorupski, K.]]
+
</jmolCheckbox>
-
[[Category: Taylor, R T.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yg2 ConSurf].
-
[[Category: Transcription]]
+
<div style="clear:both"></div>
-
[[Category: Transcription factor]]
+
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Vibrio cholerae]]
[[Category: Vibrio cholerae]]
-
[[Category: Virulence factor]]
+
[[Category: De Silva RS]]
-
[[Category: Winged helix]]
+
[[Category: Kovacikova G]]
 +
[[Category: Kull FJ]]
 +
[[Category: Lin W]]
 +
[[Category: Skorupski K]]
 +
[[Category: Taylor RT]]

Current revision

Structure of the Vibrio cholerae virulence activator AphA

PDB ID 1yg2

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1yg2"
Personal tools