1yok

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:58, 14 February 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1yok.png|left|200px]]
 
-
{{STRUCTURE_1yok| PDB=1yok | SCENE= }}
+
==crystal structure of human LRH-1 bound with TIF-2 peptide and phosphatidylglycerol==
 +
<StructureSection load='1yok' size='340' side='right'caption='[[1yok]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1yok]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YOK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YOK FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=P6L:(2S)-3-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-2-[(6E)-HEXADEC-6-ENOYLOXY]PROPYL+(8E)-OCTADEC-8-ENOATE'>P6L</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yok FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yok OCA], [https://pdbe.org/1yok PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yok RCSB], [https://www.ebi.ac.uk/pdbsum/1yok PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yok ProSAT]</span></td></tr>
 +
</table>
 +
== Disease ==
 +
[https://www.uniprot.org/uniprot/NCOA2_HUMAN NCOA2_HUMAN] Note=Chromosomal aberrations involving NCOA2 may be a cause of acute myeloid leukemias. Inversion inv(8)(p11;q13) generates the KAT6A-NCOA2 oncogene, which consists of the N-terminal part of KAT6A and the C-terminal part of NCOA2/TIF2. KAT6A-NCOA2 binds to CREBBP and disrupts its function in transcription activation.
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/NCOA2_HUMAN NCOA2_HUMAN] Transcriptional coactivator for steroid receptors and nuclear receptors. Coactivator of the steroid binding domain (AF-2) but not of the modulating N-terminal domain (AF-1). Required with NCOA1 to control energy balance between white and brown adipose tissues.<ref>PMID:9430642</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yo/1yok_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yok ConSurf].
 +
<div style="clear:both"></div>
-
===crystal structure of human LRH-1 bound with TIF-2 peptide and phosphatidylglycerol===
+
==See Also==
-
 
+
*[[Liver receptor homolog-1|Liver receptor homolog-1]]
-
{{ABSTRACT_PUBMED_15707893}}
+
== References ==
-
 
+
<references/>
-
==About this Structure==
+
__TOC__
-
[[1yok]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YOK OCA].
+
</StructureSection>
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:015707893</ref><references group="xtra"/>
+
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Bynum, J M.]]
+
[[Category: Large Structures]]
-
[[Category: Fletterick, R J.]]
+
[[Category: Bynum JM]]
-
[[Category: Guy, R K.]]
+
[[Category: Fletterick RJ]]
-
[[Category: Ingraham, H A.]]
+
[[Category: Guy RK]]
-
[[Category: Juzumiene, D.]]
+
[[Category: Ingraham HA]]
-
[[Category: Krylova, I N.]]
+
[[Category: Juzumiene D]]
-
[[Category: Lebedeva, L.]]
+
[[Category: Krylova IN]]
-
[[Category: MacKay, J A.]]
+
[[Category: Lebedeva L]]
-
[[Category: Madauss, K.]]
+
[[Category: MacKay JA]]
-
[[Category: Montana, V.]]
+
[[Category: Madauss K]]
-
[[Category: Moore, J.]]
+
[[Category: Montana V]]
-
[[Category: Sablin, E P.]]
+
[[Category: Moore J]]
-
[[Category: Suzawa, M.]]
+
[[Category: Sablin EP]]
-
[[Category: Thornton, J W.]]
+
[[Category: Suzawa M]]
-
[[Category: Waitt, G M.]]
+
[[Category: Thornton JW]]
-
[[Category: Williams, J D.]]
+
[[Category: Waitt GM]]
-
[[Category: Williams, S P.]]
+
[[Category: Williams JD]]
-
[[Category: Willson, T M.]]
+
[[Category: Williams SP]]
-
[[Category: Xu, R X.]]
+
[[Category: Willson TM]]
-
[[Category: Lrh-1]]
+
[[Category: Xu RX]]
-
[[Category: Phosphatidylglycerol]]
+
-
[[Category: Tif-1]]
+
-
[[Category: Transcription]]
+

Current revision

crystal structure of human LRH-1 bound with TIF-2 peptide and phosphatidylglycerol

PDB ID 1yok

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1yok"
Personal tools