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1yrx

From Proteopedia

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{{Seed}}
 
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[[Image:1yrx.png|left|200px]]
 
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<!--
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==Structure of a novel photoreceptor: the BLUF domain of AppA from Rhodobacter sphaeroides==
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The line below this paragraph, containing "STRUCTURE_1yrx", creates the "Structure Box" on the page.
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<StructureSection load='1yrx' size='340' side='right'caption='[[1yrx]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1yrx]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Cereibacter_sphaeroides_2.4.1 Cereibacter sphaeroides 2.4.1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YRX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YRX FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=D9G:N-DODECYL-N,N-DIMETHYLGLYCINATE'>D9G</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene></td></tr>
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{{STRUCTURE_1yrx| PDB=1yrx | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yrx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yrx OCA], [https://pdbe.org/1yrx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yrx RCSB], [https://www.ebi.ac.uk/pdbsum/1yrx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yrx ProSAT]</span></td></tr>
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</table>
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===Structure of a novel photoreceptor: the BLUF domain of AppA from Rhodobacter sphaeroides===
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== Function ==
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[https://www.uniprot.org/uniprot/Q53119_CERSP Q53119_CERSP]
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== Evolutionary Conservation ==
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<!--
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[[Image:Consurf_key_small.gif|200px|right]]
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The line below this paragraph, {{ABSTRACT_PUBMED_15924418}}, adds the Publication Abstract to the page
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Check<jmol>
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(as it appears on PubMed at http://www.pubmed.gov), where 15924418 is the PubMed ID number.
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yr/1yrx_consurf.spt"</scriptWhenChecked>
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{{ABSTRACT_PUBMED_15924418}}
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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==About this Structure==
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</jmolCheckbox>
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1YRX is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YRX OCA].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yrx ConSurf].
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<div style="clear:both"></div>
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==Reference==
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__TOC__
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Structure of a novel photoreceptor, the BLUF domain of AppA from Rhodobacter sphaeroides., Anderson S, Dragnea V, Masuda S, Ybe J, Moffat K, Bauer C, Biochemistry. 2005 Jun 7;44(22):7998-8005. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15924418 15924418]
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</StructureSection>
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[[Category: Rhodobacter sphaeroides]]
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[[Category: Cereibacter sphaeroides 2 4.1]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Anderson, S.]]
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[[Category: Anderson S]]
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[[Category: Bauer, C.]]
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[[Category: Bauer C]]
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[[Category: Dragnea, V.]]
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[[Category: Dragnea V]]
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[[Category: Masuda, S.]]
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[[Category: Masuda S]]
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[[Category: Moffat, K.]]
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[[Category: Moffat K]]
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[[Category: Ybe, J.]]
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[[Category: Ybe J]]
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[[Category: Ferredoxin-like fold]]
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[[Category: Flavin binding]]
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[[Category: Photoreceptor]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 14:38:31 2008''
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Current revision

Structure of a novel photoreceptor: the BLUF domain of AppA from Rhodobacter sphaeroides

PDB ID 1yrx

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