This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1z2l

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="1z2l" size="450" color="white" frame="true" align="right" spinBox="true" caption="1z2l, resolution 2.25&Aring;" /> '''Crystal structure of...)
Current revision (09:02, 14 February 2024) (edit) (undo)
 
(18 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1z2l.gif|left|200px]]<br /><applet load="1z2l" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1z2l, resolution 2.25&Aring;" />
 
-
'''Crystal structure of Allantoate-amidohydrolase from E.coli K12 in complex with substrate Allantoate'''<br />
 
-
==About this Structure==
+
==Crystal structure of Allantoate-amidohydrolase from E.coli K12 in complex with substrate Allantoate==
-
1Z2L is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] with ZN, SO4 and 1AL as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1Z2L OCA].
+
<StructureSection load='1z2l' size='340' side='right'caption='[[1z2l]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
-
[[Category: Escherichia coli]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[1z2l]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z2L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Z2L FirstGlance]. <br>
-
[[Category: Agarwal, R.]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.25&#8491;</td></tr>
-
[[Category: Burley, S.K.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1AL:ALLANTOATE+ION'>1AL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
[[Category: NYSGXRC, New.York.Structural.GenomiX.Research.Consortium.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1z2l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1z2l OCA], [https://pdbe.org/1z2l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1z2l RCSB], [https://www.ebi.ac.uk/pdbsum/1z2l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1z2l ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1z2l TOPSAN]</span></td></tr>
-
[[Category: Swaminathan, S.]]
+
</table>
-
[[Category: 1AL]]
+
== Function ==
-
[[Category: SO4]]
+
[https://www.uniprot.org/uniprot/ALLC_ECOLI ALLC_ECOLI] Involved in the anaerobic utilization of allantoin. Converts allantoate to (S)-ureidoglycolate and ammonia.<ref>PMID:10601204</ref>
-
[[Category: ZN]]
+
== Evolutionary Conservation ==
-
[[Category: allantoate]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: allantoate-amidohydrolase]]
+
Check<jmol>
-
[[Category: allantoin utilization]]
+
<jmolCheckbox>
-
[[Category: allc]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/z2/1z2l_consurf.spt"</scriptWhenChecked>
-
[[Category: new york structural genomix research consortium]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: nysgxrc]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: protein structure initiative]]
+
</jmolCheckbox>
-
[[Category: psi]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1z2l ConSurf].
-
[[Category: purine catabolism]]
+
<div style="clear:both"></div>
-
[[Category: structural genomics]]
+
== References ==
-
[[Category: t1507]]
+
<references/>
-
 
+
__TOC__
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 07:12:33 2007''
+
</StructureSection>
 +
[[Category: Escherichia coli K-12]]
 +
[[Category: Large Structures]]
 +
[[Category: Agarwal R]]
 +
[[Category: Burley SK]]
 +
[[Category: Swaminathan S]]

Current revision

Crystal structure of Allantoate-amidohydrolase from E.coli K12 in complex with substrate Allantoate

PDB ID 1z2l

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools