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1zbh
From Proteopedia
(Difference between revisions)
(New page: 200px<br /> <applet load="1zbh" size="450" color="white" frame="true" align="right" spinBox="true" caption="1zbh, resolution 3.00Å" /> '''3'-end specific rec...) |
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| - | [[Image:1zbh.gif|left|200px]]<br /> | ||
| - | <applet load="1zbh" size="450" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="1zbh, resolution 3.00Å" /> | ||
| - | '''3'-end specific recognition of histone mRNA stem-loop by 3'-exonuclease'''<br /> | ||
| - | == | + | ==3'-end specific recognition of histone mRNA stem-loop by 3'-exonuclease== |
| - | + | <StructureSection load='1zbh' size='340' side='right'caption='[[1zbh]], [[Resolution|resolution]] 3.00Å' scene=''> | |
| - | [[ | + | == Structural highlights == |
| - | [[ | + | <table><tr><td colspan='2'>[[1zbh]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZBH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZBH FirstGlance]. <br> |
| - | [[ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3Å</td></tr> |
| - | [ | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> |
| - | [[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zbh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zbh OCA], [https://pdbe.org/1zbh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zbh RCSB], [https://www.ebi.ac.uk/pdbsum/1zbh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zbh ProSAT]</span></td></tr> |
| - | + | </table> | |
| - | [ | + | == Function == |
| + | [https://www.uniprot.org/uniprot/ERI1_HUMAN ERI1_HUMAN] RNA exonuclease that binds to the 3'-end of histone mRNAs and degrades them, suggesting that it plays an essential role in histone mRNA decay after replication. A 2' and 3'-hydroxyl groups at the last nucleotide of the histone 3'-end is required for efficient degradation of RNA substrates. Also able to degrade the 3'-overhangs of short interfering RNAs (siRNAs) in vitro, suggesting a possible role as regulator of RNA interference (RNAi). Requires for binding the 5'-ACCCA-3' sequence present in stem-loop structure. Able to bind other mRNAs. Required for 5.8S rRNA 3'-end processing. Also binds to 5.8s ribosomal RNA. Binds with high affinity to the stem-loop structure of replication-dependent histone pre-mRNAs.<ref>PMID:14536070</ref> <ref>PMID:16912046</ref> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zb/1zbh_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1zbh ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| - | + | ==See Also== | |
| + | *[[Exonuclease 3D structures|Exonuclease 3D structures]] | ||
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Homo sapiens]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Cheng Y]] | ||
| + | [[Category: Patel DJ]] | ||
Current revision
3'-end specific recognition of histone mRNA stem-loop by 3'-exonuclease
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