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2b08

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(New page: 200px<br /><applet load="2b08" size="450" color="white" frame="true" align="right" spinBox="true" caption="2b08, resolution 1.90&Aring;" /> '''Reduced acetamide-bo...)
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[[Image:2b08.gif|left|200px]]<br /><applet load="2b08" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="2b08, resolution 1.90&Aring;" />
 
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'''Reduced acetamide-bound M150G Nitrite Reductase from Alcaligenes faecalis'''<br />
 
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==Overview==
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==Reduced acetamide-bound M150G Nitrite Reductase from Alcaligenes faecalis==
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Copper-containing nitrite reductase harbors a type-1 and a type-2 Cu site., The former acts as the electron acceptor site of the enzyme, and the, latter is the site of catalytic action. The effect of the methionine, ligand on the reorganization energy of the type-1 site was explored by, studying the electron-transfer kinetics between NiR (wild type (wt) and, the variants Met150Gly and Met150Thr) with Fe(II)EDTA and Fe(II)HEDTA. The, mutations increased the reorganization energy by 0.3 eV (30 kJ mol-1). A, similar increase was found from pulse radiolysis experiments on the wt NIR, and three variants (Met150Gly, Met150His, and Met150Thr). Binding of the, nearby Met62 to the type-1 Cu site in Met150Gly (under influence of an, allosteric effector) lowered the reorganization energy back to, approximately the wt value. According to XRD data the structure of the, reduced type-1 site in Met150Gly NiR in the presence of an allosteric, effector is similar to that in the reduced wt NiR (solved to 1.85 A), compatible with the similarity in reorganization energy.
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<StructureSection load='2b08' size='340' side='right'caption='[[2b08]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2b08]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Alcaligenes_faecalis Alcaligenes faecalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2B08 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2B08 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACM:ACETAMIDE'>ACM</scene>, <scene name='pdbligand=CU1:COPPER+(I)+ION'>CU1</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2b08 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2b08 OCA], [https://pdbe.org/2b08 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2b08 RCSB], [https://www.ebi.ac.uk/pdbsum/2b08 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2b08 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/NIR_ALCFA NIR_ALCFA]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b0/2b08_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2b08 ConSurf].
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<div style="clear:both"></div>
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==About this Structure==
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==See Also==
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2B08 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Alcaligenes_faecalis Alcaligenes faecalis] with CU1 and ACM as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Nitrite_reductase_(NO-forming) Nitrite reductase (NO-forming)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.2.1 1.7.2.1] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2B08 OCA].
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*[[Nitrite reductase 3D structures|Nitrite reductase 3D structures]]
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__TOC__
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==Reference==
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</StructureSection>
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Effect of the methionine ligand on the reorganization energy of the type-1 copper site of nitrite reductase., Wijma HJ, MacPherson I, Farver O, Tocheva EI, Pecht I, Verbeet MP, Murphy ME, Canters GW, J Am Chem Soc. 2007 Jan 24;129(3):519-25. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=17227014 17227014]
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[[Category: Alcaligenes faecalis]]
[[Category: Alcaligenes faecalis]]
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[[Category: Nitrite reductase (NO-forming)]]
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[[Category: Large Structures]]
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[[Category: Single protein]]
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[[Category: Canters GW]]
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[[Category: Canters, G.W.]]
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[[Category: Farver O]]
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[[Category: Farver, O.]]
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[[Category: MacPherson IS]]
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[[Category: MacPherson, I.S.]]
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[[Category: Murphy MEP]]
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[[Category: Murphy, M.E.P.]]
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[[Category: Pecht I]]
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[[Category: Pecht, I.]]
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[[Category: Tocheva EI]]
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[[Category: Tocheva, E.I.]]
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[[Category: Verbeet MPh]]
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[[Category: Verbeet, M.Ph.]]
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[[Category: Wijma HJ]]
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[[Category: Wijma, H.J.]]
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[[Category: ACM]]
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[[Category: CU1]]
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[[Category: acetamide]]
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[[Category: allosteric control]]
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[[Category: axial methionine]]
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[[Category: met62]]
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[[Category: reorganization energy]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Wed Nov 21 08:29:38 2007''
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Current revision

Reduced acetamide-bound M150G Nitrite Reductase from Alcaligenes faecalis

PDB ID 2b08

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