This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2btv
From Proteopedia
(Difference between revisions)
m (Protected "2btv" [edit=sysop:move=sysop]) |
|||
| (9 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:2btv.png|left|200px]] | ||
| - | + | ==ATOMIC MODEL FOR BLUETONGUE VIRUS (BTV) CORE== | |
| + | <SX load='2btv' size='340' side='right' viewer='molstar' caption='[[2btv]], [[Resolution|resolution]] 3.50Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[2btv]] is a 15 chain structure with sequence from [https://en.wikipedia.org/wiki/Bluetongue_virus_(serotype_1_/_isolate_South_Africa) Bluetongue virus (serotype 1 / isolate South Africa)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BTV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BTV FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.5Å</td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2btv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2btv OCA], [https://pdbe.org/2btv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2btv RCSB], [https://www.ebi.ac.uk/pdbsum/2btv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2btv ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/VP3_BTV1S VP3_BTV1S] The VP3 protein is one of the five proteins (with VP1, VP4, VP6 and VP7) which form the inner capsid of the virus. | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bt/2btv_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2btv ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| - | == | + | ==See Also== |
| - | + | *[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]] | |
| - | + | __TOC__ | |
| - | + | </SX> | |
| - | + | [[Category: Large Structures]] | |
| - | [[ | + | [[Category: Burroughs JN]] |
| - | + | [[Category: Diprose JM]] | |
| - | + | [[Category: Gouet P]] | |
| - | + | [[Category: Grimes JM]] | |
| - | [[Category: | + | [[Category: Malby R]] |
| - | [[Category: Burroughs | + | [[Category: Mertens PPC]] |
| - | [[Category: Diprose | + | [[Category: Stuart DI]] |
| - | [[Category: Gouet | + | [[Category: Zientras S]] |
| - | [[Category: Grimes | + | |
| - | [[Category: Malby | + | |
| - | [[Category: Mertens | + | |
| - | [[Category: Stuart | + | |
| - | [[Category: Zientras | + | |
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
ATOMIC MODEL FOR BLUETONGUE VIRUS (BTV) CORE
| |||||||||
Categories: Large Structures | Burroughs JN | Diprose JM | Gouet P | Grimes JM | Malby R | Mertens PPC | Stuart DI | Zientras S
