This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2ewf

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:19, 14 February 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2ewf.gif|left|200px]]
 
-
<!--
+
==Crystal structure of the site-specific DNA nickase N.BspD6I==
-
The line below this paragraph, containing "STRUCTURE_2ewf", creates the "Structure Box" on the page.
+
<StructureSection load='2ewf' size='340' side='right'caption='[[2ewf]], [[Resolution|resolution]] 1.84&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2ewf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_sp._D6 Bacillus sp. D6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EWF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2EWF FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.84&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BR:BROMIDE+ION'>BR</scene></td></tr>
-
{{STRUCTURE_2ewf| PDB=2ewf | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ewf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ewf OCA], [https://pdbe.org/2ewf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ewf RCSB], [https://www.ebi.ac.uk/pdbsum/2ewf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ewf ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A3FEV7_9BACI A3FEV7_9BACI]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ew/2ewf_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ewf ConSurf].
 +
<div style="clear:both"></div>
-
'''Crystal structure of the site-specific DNA nickase N.BspD6I'''
+
==See Also==
-
 
+
*[[Endonuclease 3D structures|Endonuclease 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
2EWF is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_sp. Bacillus sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EWF OCA].
+
[[Category: Bacillus sp. D6]]
-
[[Category: Bacillus sp.]]
+
[[Category: Large Structures]]
-
[[Category: Single protein]]
+
[[Category: Artyukh RI]]
-
[[Category: Artyukh, R I.]]
+
[[Category: Bartunik HD]]
-
[[Category: Bartunik, H D.]]
+
[[Category: Kachalova GS]]
-
[[Category: Kachalova, G S.]]
+
[[Category: Matvienko NI]]
-
[[Category: Matvienko, N I.]]
+
[[Category: Perevyazova TA]]
-
[[Category: Perevyazova, T A.]]
+
[[Category: Rogulin EA]]
-
[[Category: Rogulin, E A.]]
+
[[Category: Zheleznaya LA]]
-
[[Category: Zheleznaya, L A.]]
+
-
[[Category: Beta-alpha-barrel]]
+
-
[[Category: Helix-turn-helix]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 03:11:32 2008''
+

Current revision

Crystal structure of the site-specific DNA nickase N.BspD6I

PDB ID 2ewf

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools