This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2fb5
From Proteopedia
(Difference between revisions)
| (14 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:2fb5.gif|left|200px]]<br /><applet load="2fb5" size="350" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="2fb5, resolution 1.99Å" /> | ||
| - | '''Structural Genomics; The crystal structure of the hypothetical membrane spanning protein from Bacillus cereus'''<br /> | ||
| - | == | + | ==Structural Genomics; The crystal structure of the hypothetical membrane spanning protein from Bacillus cereus== |
| - | + | <StructureSection load='2fb5' size='340' side='right'caption='[[2fb5]], [[Resolution|resolution]] 1.99Å' scene=''> | |
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[2fb5]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_cereus Bacillus cereus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FB5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FB5 FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.99Å</td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2fb5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fb5 OCA], [https://pdbe.org/2fb5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2fb5 RCSB], [https://www.ebi.ac.uk/pdbsum/2fb5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2fb5 ProSAT], [https://www.topsan.org/Proteins/MCSG/2fb5 TOPSAN]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/Q812L9_BACCR Q812L9_BACCR] Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.[HAMAP-Rule:MF_00838] | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fb/2fb5_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2fb5 ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Bacillus cereus]] | [[Category: Bacillus cereus]] | ||
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: Abdullah | + | [[Category: Abdullah J]] |
| - | [[Category: Collart | + | [[Category: Collart F]] |
| - | [[Category: Ginell | + | [[Category: Ginell S]] |
| - | [[Category: Joachimiak | + | [[Category: Joachimiak A]] |
| - | + | [[Category: Zhang R]] | |
| - | [[Category: Zhang | + | [[Category: Zhou M]] |
| - | [[Category: Zhou | + | |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Structural Genomics; The crystal structure of the hypothetical membrane spanning protein from Bacillus cereus
| |||||||||||

