2fmz

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(New page: 200px<br /> <applet load="2fmz" size="450" color="white" frame="true" align="right" spinBox="true" caption="2fmz, resolution 1.60&Aring;" /> '''Carbonic anhydrase ...)
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[[Image:2fmz.gif|left|200px]]<br />
 
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<applet load="2fmz" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="2fmz, resolution 1.60&Aring;" />
 
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'''Carbonic anhydrase activators. Activation of isoforms I, II, IV, VA, VII and XIV with L- and D- phenylalanine, structure with D-Phenylalanine.'''<br />
 
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==Overview==
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==Carbonic anhydrase activators. Activation of isoforms I, II, IV, VA, VII and XIV with L- and D- phenylalanine, structure with D-Phenylalanine.==
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Activation of six human brain carbonic anhydrases (hCAs, EC 4.2.1.1), hCA, I, II, IV, VA, VII, and XIV, with l-/d-phenylalanine was investigated, kinetically and by X-ray crystallography. l-Phe was a potent activator of, isozymes I, II, and XIV (K(A)s of 13-240 nM), a weaker activator of hCA VA, and VII (K(A)s of 9.8-10.9 microM), and a quite inefficient hCA IV, activator (K(A) of 52 microM). d-Phe showed good hCA II activatory, properties (K(A) of 35 nM), being a moderate hCA VA, VII, and XIV (K(A)s, of 4.6-9.7 microM) and a weak hCA I and IV activator (K(A)s of 63-86, microM). X-ray crystallography of the hCA II-l-Phe/d-Phe adducts showed, the activators to be anchored at the entrance of the active site, participating in numerous bonds and hydrophobic interactions with amino, acid residues His64, Thr200, Trp5, and Pro201. This is the first study, showing different binding modes of stereoisomeric activators within the, hCA II active site, with consequences for overall proton transfer, processes (rate-determining for the catalytic cycle). It also points out, differences of activation efficiency between various isozymes with, structurally related activators, exploitable for designing alternative, proton transfer pathways. CA activators may lead to the design of, pharmacologically useful derivatives for the enhancement of synaptic, efficacy, which may represent a conceptually new approach for the, treatment of Alzheimer's disease, aging, and other conditions in which, spatial learning and memory therapy must be enhanced. As the blood and, brain concentrations of l-Phe are quite variable (30-73 microM), activity, of some brain CAs may strongly be influenced by the level of activator(s), present in such tissues.
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<StructureSection load='2fmz' size='340' side='right'caption='[[2fmz]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2fmz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FMZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FMZ FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DPN:D-PHENYLALANINE'>DPN</scene>, <scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2fmz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fmz OCA], [https://pdbe.org/2fmz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2fmz RCSB], [https://www.ebi.ac.uk/pdbsum/2fmz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2fmz ProSAT]</span></td></tr>
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</table>
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== Disease ==
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[https://www.uniprot.org/uniprot/CAH2_HUMAN CAH2_HUMAN] Defects in CA2 are the cause of osteopetrosis autosomal recessive type 3 (OPTB3) [MIM:[https://omim.org/entry/259730 259730]; also known as osteopetrosis with renal tubular acidosis, carbonic anhydrase II deficiency syndrome, Guibaud-Vainsel syndrome or marble brain disease. Osteopetrosis is a rare genetic disease characterized by abnormally dense bone, due to defective resorption of immature bone. The disorder occurs in two forms: a severe autosomal recessive form occurring in utero, infancy, or childhood, and a benign autosomal dominant form occurring in adolescence or adulthood. Autosomal recessive osteopetrosis is usually associated with normal or elevated amount of non-functional osteoclasts. OPTB3 is associated with renal tubular acidosis, cerebral calcification (marble brain disease) and in some cases with mental retardation.<ref>PMID:1928091</ref> <ref>PMID:1542674</ref> <ref>PMID:8834238</ref> <ref>PMID:9143915</ref> <ref>PMID:15300855</ref>
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== Function ==
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[https://www.uniprot.org/uniprot/CAH2_HUMAN CAH2_HUMAN] Essential for bone resorption and osteoclast differentiation (By similarity). Reversible hydration of carbon dioxide. Can hydrate cyanamide to urea. Involved in the regulation of fluid secretion into the anterior chamber of the eye.<ref>PMID:10550681</ref> <ref>PMID:11831900</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fm/2fmz_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2fmz ConSurf].
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<div style="clear:both"></div>
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==Disease==
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==See Also==
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Known disease associated with this structure: Osteopetrosis, autosomal recessive 3, with renal tubular acidosis OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=611492 611492]]
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*[[Carbonic anhydrase 3D structures|Carbonic anhydrase 3D structures]]
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== References ==
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==About this Structure==
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<references/>
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2FMZ is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with ZN, HG and DPN as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Carbonate_dehydratase Carbonate dehydratase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.1 4.2.1.1] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2FMZ OCA].
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__TOC__
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</StructureSection>
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==Reference==
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Carbonic anhydrase activators. Activation of isoforms I, II, IV, VA, VII, and XIV with L- and D-phenylalanine and crystallographic analysis of their adducts with isozyme II: stereospecific recognition within the active site of an enzyme and its consequences for the drug design., Temperini C, Scozzafava A, Vullo D, Supuran CT, J Med Chem. 2006 May 18;49(10):3019-27. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=16686544 16686544]
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[[Category: Carbonate dehydratase]]
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[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: ISPC, Israel.Structural.Proteomics.Center.]]
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[[Category: Scozzafava A]]
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[[Category: Scozzafava, A.]]
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[[Category: Supuran CT]]
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[[Category: Supuran, C.T.]]
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[[Category: Temperini C]]
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[[Category: Temperini, C.]]
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[[Category: Vullo D]]
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[[Category: Vullo, D.]]
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[[Category: DPN]]
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[[Category: HG]]
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[[Category: ZN]]
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[[Category: activators]]
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[[Category: carbonic anhydrase]]
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[[Category: crystal structure]]
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[[Category: ispc]]
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[[Category: israel structural proteomics center]]
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[[Category: structural genomics]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Mon Nov 12 22:07:55 2007''
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Current revision

Carbonic anhydrase activators. Activation of isoforms I, II, IV, VA, VII and XIV with L- and D- phenylalanine, structure with D-Phenylalanine.

PDB ID 2fmz

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