2hq8

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:33, 14 February 2024) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='2hq8' size='340' side='right'caption='[[2hq8]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
<StructureSection load='2hq8' size='340' side='right'caption='[[2hq8]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2hq8]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mueller's_sea_pansy Mueller's sea pansy]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HQ8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2HQ8 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2hq8]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Renilla_muelleri Renilla muelleri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HQ8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2HQ8 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2hps|2hps]]</div></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2hq8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hq8 OCA], [https://pdbe.org/2hq8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2hq8 RCSB], [https://www.ebi.ac.uk/pdbsum/2hq8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2hq8 ProSAT], [https://www.topsan.org/Proteins/SECSG/2hq8 TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2hq8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hq8 OCA], [https://pdbe.org/2hq8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2hq8 RCSB], [https://www.ebi.ac.uk/pdbsum/2hq8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2hq8 ProSAT], [https://www.topsan.org/Proteins/SECSG/2hq8 TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[https://www.uniprot.org/uniprot/LBP_RENRE LBP_RENRE]] This Ca(2+)-dependent protein binds to luciferin. The luciferin of LBP is capable of reacting with luciferase and O(2) only when calcium is bound.
+
[https://www.uniprot.org/uniprot/C9V488_RENMU C9V488_RENMU]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 20: Line 20:
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2hq8 ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2hq8 ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
-
<div style="background-color:#fffaf0;">
 
-
== Publication Abstract from PubMed ==
 
-
Bioluminescence in the sea pansy Renilla involves two distinct proteins, a Ca2+-triggered coelenterazine-binding protein (CBP), and Renilla luciferase. CBP contains one tightly bound coelenterazine molecule, which becomes available for reaction with luciferase and O2 only subsequent to Ca2+ binding. CBP belongs to the EF-hand superfamily of Ca2+-binding proteins and contains three "EF-hand" Ca2+-binding sites. The overall spatial structure of recombinant selenomethionine-labeled CBP determined at 1.7 A, is found to approximate the protein scaffold characteristic of the class of Ca2+-regulated photoproteins. Photoproteins however, catalyze molecular oxygen addition to coelenterazine producing a 2-hydroperoxycoelenterazine intermediate, which is stabilized within the binding cavity in the absence of Ca2+. Addition of Ca2+ triggers the bioluminescence reaction. However in CBP this first step of oxygen addition is not allowed. The different amino acid environments and hydrogen bond interactions within the binding cavity, are proposed to account for the different properties of the two classes of proteins.
 
- 
-
Crystal structure of coelenterazine-binding protein from Renilla muelleri at 1.7 A: why it is not a calcium-regulated photoprotein.,Stepanyuk GA, Liu ZJ, Markova SS, Frank LA, Lee J, Vysotski ES, Wang BC Photochem Photobiol Sci. 2008 Apr;7(4):442-7. Epub 2008 Feb 19. PMID:18385886<ref>PMID:18385886</ref>
 
- 
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
-
</div>
 
-
<div class="pdbe-citations 2hq8" style="background-color:#fffaf0;"></div>
 
-
== References ==
 
-
<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Mueller's sea pansy]]
 
-
[[Category: Lee, J]]
 
-
[[Category: Liu, Z J]]
 
-
[[Category: Rose, J P]]
 
-
[[Category: Structural genomic]]
 
-
[[Category: Stepanyuk, G]]
 
-
[[Category: Vysotski, E S]]
 
-
[[Category: Wang, B C]]
 
-
[[Category: Coelenterazine-binding protein]]
 
-
[[Category: PSI, Protein structure initiative]]
 
[[Category: Renilla muelleri]]
[[Category: Renilla muelleri]]
-
[[Category: Secsg]]
+
[[Category: Lee J]]
-
[[Category: Unknown function]]
+
[[Category: Liu ZJ]]
 +
[[Category: Rose JP]]
 +
[[Category: Stepanyuk G]]
 +
[[Category: Vysotski ES]]
 +
[[Category: Wang BC]]

Current revision

Crystal structure of coelenterazine-binding protein from renilla muelleri in the ca loaded apo form

PDB ID 2hq8

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools