This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2ox6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:06, 21 February 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2ox6.png|left|200px]]
 
-
<!--
+
==Crystal structure of gene product SO3848 from Shewanella oneidensis MR-1==
-
The line below this paragraph, containing "STRUCTURE_2ox6", creates the "Structure Box" on the page.
+
<StructureSection load='2ox6' size='340' side='right'caption='[[2ox6]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2ox6]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Shewanella_oneidensis_MR-1 Shewanella oneidensis MR-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OX6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OX6 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
{{STRUCTURE_2ox6| PDB=2ox6 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ox6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ox6 OCA], [https://pdbe.org/2ox6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ox6 RCSB], [https://www.ebi.ac.uk/pdbsum/2ox6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ox6 ProSAT], [https://www.topsan.org/Proteins/MCSG/2ox6 TOPSAN]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of gene product SO3848 from Shewanella oneidensis MR-1===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q8EAP9_SHEON Q8EAP9_SHEON]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
2OX6 is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Shewanella_oneidensis Shewanella oneidensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OX6 OCA].
+
Check<jmol>
-
[[Category: Shewanella oneidensis]]
+
<jmolCheckbox>
-
[[Category: Bigelow, L.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ox/2ox6_consurf.spt"</scriptWhenChecked>
-
[[Category: Giuliani, S.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Joachimiak, A.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
</jmolCheckbox>
-
[[Category: Zhang, R.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ox6 ConSurf].
-
[[Category: Mcsg]]
+
<div style="clear:both"></div>
-
[[Category: Midwest center for structural genomic]]
+
__TOC__
-
[[Category: Protein structure initiative]]
+
</StructureSection>
-
[[Category: Psi-2]]
+
[[Category: Large Structures]]
-
[[Category: Shewanella oneidensis]]
+
[[Category: Shewanella oneidensis MR-1]]
-
[[Category: Structural genomic]]
+
[[Category: Bigelow L]]
-
 
+
[[Category: Giuliani S]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 13:14:56 2008''
+
[[Category: Joachimiak A]]
 +
[[Category: Zhang R]]

Current revision

Crystal structure of gene product SO3848 from Shewanella oneidensis MR-1

PDB ID 2ox6

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2ox6"
Personal tools