This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2oxp

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "2oxp" [edit=sysop:move=sysop])
Current revision (09:06, 21 February 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2oxp.png|left|200px]]
 
-
{{STRUCTURE_2oxp| PDB=2oxp | SCENE= }}
+
==Crystal Structure of Staphylococcal Nuclease mutant V66D/P117G/H124L/S128A==
-
 
+
<StructureSection load='2oxp' size='340' side='right'caption='[[2oxp]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
===Crystal Structure of Staphylococcal Nuclease mutant V66D/P117G/H124L/S128A===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[2oxp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OXP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OXP FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_17172297}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=THP:THYMIDINE-3,5-DIPHOSPHATE'>THP</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2oxp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oxp OCA], [https://pdbe.org/2oxp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2oxp RCSB], [https://www.ebi.ac.uk/pdbsum/2oxp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2oxp ProSAT]</span></td></tr>
-
[[2oxp]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OXP OCA].
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/NUC_STAAW NUC_STAAW] Enzyme that catalyzes the hydrolysis of both DNA and RNA at the 5' position of the phosphodiester bond (By similarity).
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ox/2oxp_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2oxp ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Staphylococcal nuclease|Staphylococcal nuclease]]
+
*[[Staphylococcal nuclease 3D structures|Staphylococcal nuclease 3D structures]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:017172297</ref><references group="xtra"/>
+
[[Category: Large Structures]]
-
[[Category: Micrococcal nuclease]]
+
[[Category: Staphylococcus aureus]]
[[Category: Staphylococcus aureus]]
-
[[Category: Garcia-Moreno, E B.]]
+
[[Category: Garcia-Moreno EB]]
-
[[Category: Gittis, A G.]]
+
[[Category: Gittis AG]]
-
[[Category: Karp, D A.]]
+
[[Category: Karp DA]]
-
[[Category: Hydrolase]]
+
-
[[Category: Nuclease]]
+
-
[[Category: Staphylococcal nuclease]]
+

Current revision

Crystal Structure of Staphylococcal Nuclease mutant V66D/P117G/H124L/S128A

PDB ID 2oxp

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools