This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2p8t

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:08, 21 February 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2p8t.gif|left|200px]]
 
-
{{Structure
+
==Hypothetical protein PH0730 from Pyrococcus horikoshii OT3==
-
|PDB= 2p8t |SIZE=350|CAPTION= <scene name='initialview01'>2p8t</scene>, resolution 1.800&Aring;
+
<StructureSection load='2p8t' size='340' side='right'caption='[[2p8t]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[2p8t]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P8T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P8T FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
|GENE= PH0730 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70601 Pyrococcus horikoshii OT3])
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p8t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p8t OCA], [https://pdbe.org/2p8t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p8t RCSB], [https://www.ebi.ac.uk/pdbsum/2p8t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p8t ProSAT], [https://www.topsan.org/Proteins/RSGI/2p8t TOPSAN]</span></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK03902 PRK03902]</span>
+
</table>
-
|RELATEDENTRY=
+
== Function ==
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2p8t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p8t OCA], [http://www.ebi.ac.uk/pdbsum/2p8t PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2p8t RCSB]</span>
+
[https://www.uniprot.org/uniprot/O58461_PYRHO O58461_PYRHO]
-
}}
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
'''Hypothetical protein PH0730 from Pyrococcus horikoshii OT3'''
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p8/2p8t_consurf.spt"</scriptWhenChecked>
-
==About this Structure==
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
2P8T is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii_ot3 Pyrococcus horikoshii ot3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P8T OCA].
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Pyrococcus horikoshii ot3]]
+
</jmolCheckbox>
-
[[Category: Single protein]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p8t ConSurf].
-
[[Category: Chen, L.]]
+
<div style="clear:both"></div>
-
[[Category: Chrzas, J.]]
+
__TOC__
-
[[Category: Ebihara, A.]]
+
</StructureSection>
-
[[Category: Fu, Z-Q.]]
+
[[Category: Large Structures]]
-
[[Category: Kuramitsu, S.]]
+
[[Category: Pyrococcus horikoshii OT3]]
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
[[Category: Chen L]]
-
[[Category: Rose, J P.]]
+
[[Category: Chrzas J]]
-
[[Category: SECSG, Southeast Collaboratory for Structural Genomics.]]
+
[[Category: Ebihara A]]
-
[[Category: Shinkai, A.]]
+
[[Category: Fu Z-Q]]
-
[[Category: Swindell, J T.]]
+
[[Category: Kuramitsu S]]
-
[[Category: Wang, B-C.]]
+
[[Category: Rose JP]]
-
[[Category: Yokoyama, S.]]
+
[[Category: Shinkai A]]
-
[[Category: Zhao, M.]]
+
[[Category: Swindell JT]]
-
[[Category: Zhu, J.]]
+
[[Category: Wang B-C]]
-
[[Category: hypothetical protein]]
+
[[Category: Yokoyama S]]
-
[[Category: national project on protein structural and functional analyse]]
+
[[Category: Zhao M]]
-
[[Category: nppsfa]]
+
[[Category: Zhu J]]
-
[[Category: ph0730]]
+
-
[[Category: protein structure initiative]]
+
-
[[Category: psi]]
+
-
[[Category: pyrococcus horikoshii ot3]]
+
-
[[Category: riken structural genomics/proteomics initiative]]
+
-
[[Category: rsgi]]
+
-
[[Category: secsg]]
+
-
[[Category: southeast collaboratory for structural genomic]]
+
-
[[Category: structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:32:24 2008''
+

Current revision

Hypothetical protein PH0730 from Pyrococcus horikoshii OT3

PDB ID 2p8t

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools