This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2pa4

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:08, 21 February 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2pa4.png|left|200px]]
 
-
<!--
+
==Crystal structure of UDP-glucose pyrophosphorylase from Corynebacteria glutamicum in complex with magnesium and UDP-glucose==
-
The line below this paragraph, containing "STRUCTURE_2pa4", creates the "Structure Box" on the page.
+
<StructureSection load='2pa4' size='340' side='right'caption='[[2pa4]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2pa4]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Corynebacterium_glutamicum_ATCC_13032 Corynebacterium glutamicum ATCC 13032]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PA4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PA4 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=UPG:URIDINE-5-DIPHOSPHATE-GLUCOSE'>UPG</scene></td></tr>
-
{{STRUCTURE_2pa4| PDB=2pa4 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pa4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pa4 OCA], [https://pdbe.org/2pa4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pa4 RCSB], [https://www.ebi.ac.uk/pdbsum/2pa4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pa4 ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of UDP-glucose pyrophosphorylase from Corynebacteria glutamicum in complex with magnesium and UDP-glucose===
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
<!--
+
<jmolCheckbox>
-
The line below this paragraph, {{ABSTRACT_PUBMED_17567737}}, adds the Publication Abstract to the page
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pa/2pa4_consurf.spt"</scriptWhenChecked>
-
(as it appears on PubMed at http://www.pubmed.gov), where 17567737 is the PubMed ID number.
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
-->
+
<text>to colour the structure by Evolutionary Conservation</text>
-
{{ABSTRACT_PUBMED_17567737}}
+
</jmolCheckbox>
-
 
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pa4 ConSurf].
-
==About this Structure==
+
<div style="clear:both"></div>
-
2PA4 is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Corynebacterium_glutamicum Corynebacterium glutamicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PA4 OCA].
+
__TOC__
-
 
+
</StructureSection>
-
==Reference==
+
[[Category: Corynebacterium glutamicum ATCC 13032]]
-
<ref group="xtra">PMID:17567737</ref><references group="xtra"/>
+
[[Category: Large Structures]]
-
[[Category: Corynebacterium glutamicum]]
+
[[Category: Holden HM]]
-
[[Category: UTP--glucose-1-phosphate uridylyltransferase]]
+
[[Category: Thoden JB]]
-
[[Category: Holden, H M.]]
+
-
[[Category: Thoden, J B.]]
+
-
[[Category: Metabolism]]
+
-
[[Category: Nucleotidyltransferase]]
+
-
[[Category: Phosphorylase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 18:37:16 2009''
+

Current revision

Crystal structure of UDP-glucose pyrophosphorylase from Corynebacteria glutamicum in complex with magnesium and UDP-glucose

PDB ID 2pa4

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools