This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2pvp

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:12, 21 February 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2pvp.png|left|200px]]
 
-
<!--
+
==Crystal structure of D-Alanine-D-Alanine Ligase from Helicobacter pylori==
-
The line below this paragraph, containing "STRUCTURE_2pvp", creates the "Structure Box" on the page.
+
<StructureSection load='2pvp' size='340' side='right'caption='[[2pvp]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2pvp]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicobacter_pylori_SS1 Helicobacter pylori SS1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PVP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PVP FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pvp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pvp OCA], [https://pdbe.org/2pvp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pvp RCSB], [https://www.ebi.ac.uk/pdbsum/2pvp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pvp ProSAT]</span></td></tr>
-
{{STRUCTURE_2pvp| PDB=2pvp | SCENE= }}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q2N4T5_HELPX Q2N4T5_HELPX] Cell wall formation.[HAMAP-Rule:MF_00047][SAAS:SAAS00232736]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pv/2pvp_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pvp ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal structure of D-Alanine-D-Alanine Ligase from Helicobacter pylori===
+
==See Also==
-
 
+
*[[D-alanine-D-alanine ligase 3D structures|D-alanine-D-alanine ligase 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_18320587}}, adds the Publication Abstract to the page
+
[[Category: Helicobacter pylori SS1]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 18320587 is the PubMed ID number.
+
[[Category: Large Structures]]
-
-->
+
[[Category: Jiang H]]
-
{{ABSTRACT_PUBMED_18320587}}
+
[[Category: Shen X]]
-
 
+
[[Category: Wu D]]
-
==About this Structure==
+
[[Category: Zhang L]]
-
2PVP is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Helicobacter_pylori_ss1 Helicobacter pylori ss1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PVP OCA].
+
-
 
+
-
==Reference==
+
-
Enzymatic characterization and crystal structure analysis of the D-alanine-D-alanine ligase from Helicobacter pylori., Wu D, Zhang L, Kong Y, Du J, Chen S, Chen J, Ding J, Jiang H, Shen X, Proteins. 2008 Mar 4;. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18320587 18320587]
+
-
[[Category: D-alanine--D-alanine ligase]]
+
-
[[Category: Helicobacter pylori ss1]]
+
-
[[Category: Single protein]]
+
-
[[Category: Jiang, H.]]
+
-
[[Category: Shen, X.]]
+
-
[[Category: Wu, D.]]
+
-
[[Category: Zhang, L.]]
+
-
[[Category: D-alanine-d-alanine ligase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Aug 6 09:56:15 2008''
+

Current revision

Crystal structure of D-Alanine-D-Alanine Ligase from Helicobacter pylori

PDB ID 2pvp

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2pvp"
Personal tools