This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2pw9

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:12, 21 February 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2pw9.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of a putative formate dehydrogenase accessory protein from Desulfotalea psychrophila==
-
|PDB= 2pw9 |SIZE=350|CAPTION= <scene name='initialview01'>2pw9</scene>, resolution 2.100&Aring;
+
<StructureSection load='2pw9' size='340' side='right'caption='[[2pw9]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
+
<table><tr><td colspan='2'>[[2pw9]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfotalea_psychrophila_LSv54 Desulfotalea psychrophila LSv54]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PW9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PW9 FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
|GENE= DP1777 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=84980 Desulfotalea psychrophila])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG1526 FdhD]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pw9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pw9 OCA], [https://pdbe.org/2pw9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pw9 RCSB], [https://www.ebi.ac.uk/pdbsum/2pw9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pw9 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2pw9 TOPSAN]</span></td></tr>
-
|RELATEDENTRY=
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2pw9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pw9 OCA], [http://www.ebi.ac.uk/pdbsum/2pw9 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2pw9 RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/Q6AMB9_DESPS Q6AMB9_DESPS] Necessary for formate dehydrogenase activity.[SAAS:SAAS00093836]
-
 
+
== Evolutionary Conservation ==
-
'''Crystal structure of a putative formate dehydrogenase accessory protein from Desulfotalea psychrophila'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pw/2pw9_consurf.spt"</scriptWhenChecked>
-
2PW9 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Desulfotalea_psychrophila Desulfotalea psychrophila]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PW9 OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Desulfotalea psychrophila]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Single protein]]
+
</jmolCheckbox>
-
[[Category: Almo, S C.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pw9 ConSurf].
-
[[Category: Bain, K T.]]
+
<div style="clear:both"></div>
-
[[Category: Bonanno, J B.]]
+
__TOC__
-
[[Category: Burley, S K.]]
+
</StructureSection>
-
[[Category: Dickey, M.]]
+
[[Category: Desulfotalea psychrophila LSv54]]
-
[[Category: Logan, C.]]
+
[[Category: Large Structures]]
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
[[Category: Almo SC]]
-
[[Category: Romero, R.]]
+
[[Category: Bain KT]]
-
[[Category: Sauder, M J.]]
+
[[Category: Bonanno JB]]
-
[[Category: Smith, D.]]
+
[[Category: Burley SK]]
-
[[Category: Wasserman, S.]]
+
[[Category: Dickey M]]
-
[[Category: new york structural genomix research consortium]]
+
[[Category: Logan C]]
-
[[Category: nysgxrc]]
+
[[Category: Romero R]]
-
[[Category: protein structure initiative]]
+
[[Category: Sauder JM]]
-
[[Category: psi-2]]
+
[[Category: Smith D]]
-
[[Category: structural genomic]]
+
[[Category: Wasserman S]]
-
[[Category: unknown function]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:41:32 2008''
+

Current revision

Crystal structure of a putative formate dehydrogenase accessory protein from Desulfotalea psychrophila

PDB ID 2pw9

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools