2q5c

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:14, 21 February 2024) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2q5c.jpg|left|200px]]
 
-
{{Structure
+
==Crystal structure of NtrC family transcriptional regulator from Clostridium acetobutylicum==
-
|PDB= 2q5c |SIZE=350|CAPTION= <scene name='initialview01'>2q5c</scene>, resolution 1.49&Aring;
+
<StructureSection load='2q5c' size='340' side='right'caption='[[2q5c]], [[Resolution|resolution]] 1.49&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
+
<table><tr><td colspan='2'>[[2q5c]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_acetobutylicum_ATCC_824 Clostridium acetobutylicum ATCC 824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Q5C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2Q5C FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.49&#8491;</td></tr>
-
|GENE= CA_C0459 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272562 Clostridium acetobutylicum ATCC 824])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam06506 PrpR_N]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2q5c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2q5c OCA], [https://pdbe.org/2q5c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2q5c RCSB], [https://www.ebi.ac.uk/pdbsum/2q5c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2q5c ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2q5c TOPSAN]</span></td></tr>
-
|RELATEDENTRY=
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2q5c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2q5c OCA], [http://www.ebi.ac.uk/pdbsum/2q5c PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2q5c RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/Q97LU5_CLOAB Q97LU5_CLOAB]
-
 
+
== Evolutionary Conservation ==
-
'''Crystal structure of NtrC family transcriptional regulator from Clostridium acetobutylicum'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/q5/2q5c_consurf.spt"</scriptWhenChecked>
-
2Q5C is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Clostridium_acetobutylicum_atcc_824 Clostridium acetobutylicum atcc 824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Q5C OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Clostridium acetobutylicum atcc 824]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Single protein]]
+
</jmolCheckbox>
-
[[Category: Almo, S C.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2q5c ConSurf].
-
[[Category: Burley, S K.]]
+
<div style="clear:both"></div>
-
[[Category: Dickey, M.]]
+
__TOC__
-
[[Category: Groshong, K.]]
+
</StructureSection>
-
[[Category: Iizuka, M.]]
+
[[Category: Clostridium acetobutylicum ATCC 824]]
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
[[Category: Large Structures]]
-
[[Category: Ramagopal, U A.]]
+
[[Category: Almo SC]]
-
[[Category: Rodgers, L.]]
+
[[Category: Burley SK]]
-
[[Category: Sauder, J M.]]
+
[[Category: Dickey M]]
-
[[Category: Toro, R.]]
+
[[Category: Groshong K]]
-
[[Category: new york structural genomix research consortium]]
+
[[Category: Iizuka M]]
-
[[Category: ntrc family transcriptional regulator]]
+
[[Category: Ramagopal UA]]
-
[[Category: nysgxrc]]
+
[[Category: Rodgers L]]
-
[[Category: protein structure initiative]]
+
[[Category: Sauder JM]]
-
[[Category: psi-2]]
+
[[Category: Toro R]]
-
[[Category: structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:44:58 2008''
+

Current revision

Crystal structure of NtrC family transcriptional regulator from Clostridium acetobutylicum

PDB ID 2q5c

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools