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2quw

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==Hammerhead Ribozyme G12A mutant after cleavage==
==Hammerhead Ribozyme G12A mutant after cleavage==
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<StructureSection load='2quw' size='340' side='right' caption='[[2quw]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
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<StructureSection load='2quw' size='340' side='right'caption='[[2quw]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[2quw]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QUW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2QUW FirstGlance]. <br>
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<table><tr><td colspan='2'>[[2quw]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Tobacco_ringspot_virus_satellite_RNA Tobacco ringspot virus satellite RNA]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QUW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QUW FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CCC:CYTIDINE-5-PHOSPHATE-2,3-CYCLIC+PHOSPHATE'>CCC</scene>, <scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CCC:CYTIDINE-5-PHOSPHATE-2,3-CYCLIC+PHOSPHATE'>CCC</scene>, <scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2goz|2goz]], [[2qus|2qus]]</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2quw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2quw OCA], [https://pdbe.org/2quw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2quw RCSB], [https://www.ebi.ac.uk/pdbsum/2quw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2quw ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2quw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2quw OCA], [http://pdbe.org/2quw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2quw RCSB], [http://www.ebi.ac.uk/pdbsum/2quw PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2quw ProSAT]</span></td></tr>
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</table>
</table>
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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We have obtained precatalytic (enzyme-substrate complex) and postcatalytic (enzyme-product complex) crystal structures of an active full-length hammerhead RNA that cleaves in the crystal. Using the natural satellite tobacco ringspot virus hammerhead RNA sequence, the self-cleavage reaction was modulated by substituting the general base of the ribozyme, G12, with A12, a purine variant with a much lower pKa that does not significantly perturb the ribozyme's atomic structure. The active, but slowly cleaving, ribozyme thus permitted isolation of enzyme-substrate and enzyme-product complexes without modifying the nucleophile or leaving group of the cleavage reaction, nor any other aspect of the substrate. The predissociation enzyme-product complex structure reveals RNA and metal ion interactions potentially relevant to transition-state stabilization that are absent in precatalytic structures.
 
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Capturing hammerhead ribozyme structures in action by modulating general base catalysis.,Chi YI, Martick M, Lares M, Kim R, Scott WG, Kim SH PLoS Biol. 2008 Sep 30;6(9):e234. PMID:18834200<ref>PMID:18834200</ref>
 
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
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</div>
 
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<div class="pdbe-citations 2quw" style="background-color:#fffaf0;"></div>
 
==See Also==
==See Also==
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*[[Ribozyme|Ribozyme]]
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*[[Ribozyme 3D structures|Ribozyme 3D structures]]
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== References ==
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<references/>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Chi, Y I]]
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[[Category: Large Structures]]
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[[Category: Kim, S H]]
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[[Category: Tobacco ringspot virus satellite RNA]]
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[[Category: Scott, W G]]
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[[Category: Chi YI]]
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[[Category: Catalytic rna]]
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[[Category: Kim SH]]
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[[Category: Hammerhead ribozyme]]
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[[Category: Scott WG]]
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[[Category: Ribozyme]]
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[[Category: Ribozyme-product complex]]
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[[Category: Rna]]
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Current revision

Hammerhead Ribozyme G12A mutant after cleavage

PDB ID 2quw

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