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2qy6

From Proteopedia

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[[Image:2qy6.jpg|left|200px]]
 
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{{Structure
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==Crystal structure of the N-terminal domain of UPF0209 protein yfcK from Escherichia coli O157:H7==
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|PDB= 2qy6 |SIZE=350|CAPTION= <scene name='initialview01'>2qy6</scene>, resolution 2.000&Aring;
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<StructureSection load='2qy6' size='340' side='right'caption='[[2qy6]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND=
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<table><tr><td colspan='2'>[[2qy6]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_O157:H7 Escherichia coli O157:H7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QY6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QY6 FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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|GENE= yfcK, Z3587, ECs3208 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83334 Escherichia coli O157:H7])
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qy6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qy6 OCA], [https://pdbe.org/2qy6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qy6 RCSB], [https://www.ebi.ac.uk/pdbsum/2qy6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qy6 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2qy6 TOPSAN]</span></td></tr>
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|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG4121 COG4121]</span>
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</table>
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2qy6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qy6 OCA], [http://www.ebi.ac.uk/pdbsum/2qy6 PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2qy6 RCSB]</span>
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== Function ==
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}}
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[https://www.uniprot.org/uniprot/MNMC_ECO57 MNMC_ECO57] Catalyzes the last two steps in the biosynthesis of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34.[HAMAP-Rule:MF_01102]
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== Evolutionary Conservation ==
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'''Crystal structure of the N-terminal domain of UPF0209 protein yfcK from Escherichia coli O157:H7'''
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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==About this Structure==
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qy/2qy6_consurf.spt"</scriptWhenChecked>
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2QY6 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_o157:h7 Escherichia coli o157:h7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QY6 OCA].
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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[[Category: Escherichia coli o157:h7]]
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: Single protein]]
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</jmolCheckbox>
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[[Category: Almo, S C.]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qy6 ConSurf].
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[[Category: Bain, K T.]]
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<div style="clear:both"></div>
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[[Category: Bonanno, J B.]]
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__TOC__
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[[Category: Burley, S K.]]
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</StructureSection>
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[[Category: Dickey, M.]]
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[[Category: Escherichia coli O157:H7]]
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[[Category: Eberle, M.]]
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[[Category: Large Structures]]
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[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
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[[Category: Almo SC]]
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[[Category: Ozyurt, S.]]
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[[Category: Bain KT]]
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[[Category: Sauder, J M.]]
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[[Category: Bonanno JB]]
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[[Category: Smith, D.]]
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[[Category: Burley SK]]
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[[Category: Wasserman, S.]]
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[[Category: Dickey M]]
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[[Category: new york structural genomix research consortium]]
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[[Category: Eberle M]]
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[[Category: nysgxrc]]
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[[Category: Ozyurt S]]
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[[Category: protein structure initiative]]
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[[Category: Sauder JM]]
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[[Category: psi-2]]
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[[Category: Smith D]]
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[[Category: structural genomic]]
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[[Category: Wasserman S]]
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[[Category: unknown function]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:44:34 2008''
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Current revision

Crystal structure of the N-terminal domain of UPF0209 protein yfcK from Escherichia coli O157:H7

PDB ID 2qy6

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