This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2rjz

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:22, 21 February 2024) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2rjz.jpg|left|200px]]
 
-
{{Structure
+
==Crystal structure of the type 4 fimbrial biogenesis protein PilO from Pseudomonas aeruginosa==
-
|PDB= 2rjz |SIZE=350|CAPTION= <scene name='initialview01'>2rjz</scene>, resolution 2.200&Aring;
+
<StructureSection load='2rjz' size='340' side='right'caption='[[2rjz]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
+
<table><tr><td colspan='2'>[[2rjz]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa_PAO1 Pseudomonas aeruginosa PAO1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RJZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RJZ FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
|GENE= pilO ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=208964 Pseudomonas aeruginosa PAO1])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam04350 PilO]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rjz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rjz OCA], [https://pdbe.org/2rjz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rjz RCSB], [https://www.ebi.ac.uk/pdbsum/2rjz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rjz ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2rjz TOPSAN]</span></td></tr>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2rjz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rjz OCA], [http://www.ebi.ac.uk/pdbsum/2rjz PDBsum], [http://www.fli-leibniz.de/cgi-bin/ImgLib.pl?CODE=1kfv JenaLib], [http://www.rcsb.org/pdb/explore.do?structureId=2rjz RCSB]</span>
+
</table>
-
}}
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q51353_PSEAI Q51353_PSEAI]
-
'''Crystal structure of the type 4 fimbrial biogenesis protein PilO from Pseudomonas aeruginosa'''
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
==About this Structure==
+
<jmolCheckbox>
-
2RJZ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa_pao1 Pseudomonas aeruginosa pao1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RJZ OCA].
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rj/2rjz_consurf.spt"</scriptWhenChecked>
-
[[Category: Pseudomonas aeruginosa pao1]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Single protein]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Almo, S C.]]
+
</jmolCheckbox>
-
[[Category: Bain, K T.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2rjz ConSurf].
-
[[Category: Bonanno, J B.]]
+
<div style="clear:both"></div>
-
[[Category: Burley, S K.]]
+
__TOC__
-
[[Category: Chang, S.]]
+
</StructureSection>
-
[[Category: Freeman, J.]]
+
[[Category: Large Structures]]
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
[[Category: Pseudomonas aeruginosa PAO1]]
-
[[Category: Ozyurt, S.]]
+
[[Category: Almo SC]]
-
[[Category: Sauder, J M.]]
+
[[Category: Bain KT]]
-
[[Category: Smith, D.]]
+
[[Category: Bonanno JB]]
-
[[Category: Wasserman, S.]]
+
[[Category: Burley SK]]
-
[[Category: new york structural genomix research consortium]]
+
[[Category: Chang S]]
-
[[Category: nysgxrc]]
+
[[Category: Freeman J]]
-
[[Category: protein structure initiative]]
+
[[Category: Ozyurt S]]
-
[[Category: psi-2]]
+
[[Category: Sauder JM]]
-
[[Category: structural genomic]]
+
[[Category: Smith D]]
-
[[Category: unknown function]]
+
[[Category: Wasserman S]]
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 26 06:46:17 2008''
+

Current revision

Crystal structure of the type 4 fimbrial biogenesis protein PilO from Pseudomonas aeruginosa

PDB ID 2rjz

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools