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2udp

From Proteopedia

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UDP-GALACTOSE 4-EPIMERASE COMPLEXED WITH UDP-PHENOL

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OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2udp"

Categories: Escherichia coli | Large Structures | Gulick AM | Holden HM | Thoden JB

@@ Line 1: / Line 1: @@
-{{Seed}}
-[[Image:2udp.png|left|200px]]
-<!--
+==UDP-GALACTOSE 4-EPIMERASE COMPLEXED WITH UDP-PHENOL==
-The line below this paragraph, containing "STRUCTURE_2udp", creates the "Structure Box" on the page.
+<StructureSection load='2udp' size='340' side='right'caption='[[2udp]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2udp]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1udp 1udp]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UDP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2UDP FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=UPP:PHENYL-URIDINE-5-DIPHOSPHATE'>UPP</scene></td></tr>
-{{STRUCTURE_2udp|  PDB=2udp  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2udp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2udp OCA], [https://pdbe.org/2udp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2udp RCSB], [https://www.ebi.ac.uk/pdbsum/2udp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2udp ProSAT]</span></td></tr>
+</table>
-===UDP-GALACTOSE 4-EPIMERASE COMPLEXED WITH UDP-PHENOL===
+== Function ==
+[https://www.uniprot.org/uniprot/GALE_ECOLI GALE_ECOLI]
+== Evolutionary Conservation ==
-<!--
+[[Image:Consurf_key_small.gif|200px|right]]
-The line below this paragraph, {{ABSTRACT_PUBMED_8931134}}, adds the Publication Abstract to the page
+Check<jmol>
-(as it appears on PubMed at http://www.pubmed.gov), where 8931134 is the PubMed ID number.
+  <jmolCheckbox>
--->
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ud/2udp_consurf.spt"</scriptWhenChecked>
-{{ABSTRACT_PUBMED_8931134}}
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
-==About this Structure==
+  </jmolCheckbox>
-UDP is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1udp 1udp]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UDP OCA].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2udp ConSurf].
+<div style="clear:both"></div>
-==Reference==
+__TOC__
-High-resolution X-ray structure of UDP-galactose 4-epimerase complexed with UDP-phenol., Thoden JB, Frey PA, Holden HM, Protein Sci. 1996 Nov;5(11):2149-61. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/8931134 8931134]
+</StructureSection>
 [[Category: Escherichia coli]]
-[[Category: Single protein]]
+[[Category: Large Structures]]
-[[Category: UDP-glucose 4-epimerase]]
+[[Category: Gulick AM]]
-[[Category: Gulick, A.]]
+[[Category: Holden HM]]
-[[Category: Holden, H M.]]
+[[Category: Thoden JB]]
-[[Category: Thoden, J B.]]
-[[Category: Epimerase]]
-[[Category: Galactose metabolism]]
-[[Category: Isomerase]]
-[[Category: Udp-galactose]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 07:58:14 2008''

2udp

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Current revision

UDP-GALACTOSE 4-EPIMERASE COMPLEXED WITH UDP-PHENOL

Structural highlights

Function

Evolutionary Conservation

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