This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3ahm

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:26, 21 February 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3ahm.jpg|left|200px]]
 
-
<!--
+
==Pz peptidase a==
-
The line below this paragraph, containing "STRUCTURE_3ahm", creates the "Structure Box" on the page.
+
<StructureSection load='3ahm' size='340' side='right'caption='[[3ahm]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3ahm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Geobacillus_sp._MO-1 Geobacillus sp. MO-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AHM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3AHM FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
{{STRUCTURE_3ahm| PDB=3ahm | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ahm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ahm OCA], [https://pdbe.org/3ahm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ahm RCSB], [https://www.ebi.ac.uk/pdbsum/3ahm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ahm ProSAT]</span></td></tr>
-
 
+
</table>
-
===Pz peptidase a===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q4W803_9BACI Q4W803_9BACI]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
3AHM is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Bacteria Bacteria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AHM OCA].
+
Check<jmol>
-
[[Category: Bacteria]]
+
<jmolCheckbox>
-
[[Category: Nakano, H.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ah/3ahm_consurf.spt"</scriptWhenChecked>
-
[[Category: Hydrolase]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Aug 25 08:53:36 2010''
+
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ahm ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Geobacillus sp. MO-1]]
 +
[[Category: Large Structures]]
 +
[[Category: Nakano H]]

Current revision

Pz peptidase a

PDB ID 3ahm

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools