This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3b40

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:27, 21 February 2024) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Crystal structure of the probable dipeptidase PvdM from Pseudomonas aeruginosa==
==Crystal structure of the probable dipeptidase PvdM from Pseudomonas aeruginosa==
-
<StructureSection load='3b40' size='340' side='right' caption='[[3b40]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+
<StructureSection load='3b40' size='340' side='right'caption='[[3b40]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3b40]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B40 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3B40 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3b40]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B40 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3B40 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">pvdM, PA2393 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3b40 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b40 OCA], [http://pdbe.org/3b40 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3b40 RCSB], [http://www.ebi.ac.uk/pdbsum/3b40 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3b40 ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/3b40 TOPSAN]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3b40 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b40 OCA], [https://pdbe.org/3b40 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3b40 RCSB], [https://www.ebi.ac.uk/pdbsum/3b40 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3b40 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3b40 TOPSAN]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q5DIQ1_PSEAI Q5DIQ1_PSEAI]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 20: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Almo, S C]]
+
[[Category: Large Structures]]
-
[[Category: Bain, K T]]
+
[[Category: Pseudomonas aeruginosa]]
-
[[Category: Bonanno, J B]]
+
[[Category: Almo SC]]
-
[[Category: Burley, S K]]
+
[[Category: Bain KT]]
-
[[Category: Dickey, M]]
+
[[Category: Bonanno JB]]
-
[[Category: Fong, R]]
+
[[Category: Burley SK]]
-
[[Category: Mendoza, M]]
+
[[Category: Dickey M]]
-
[[Category: Structural genomic]]
+
[[Category: Fong R]]
-
[[Category: Patskovsky, Y]]
+
[[Category: Mendoza M]]
-
[[Category: Sauder, J M]]
+
[[Category: Patskovsky Y]]
-
[[Category: Smith, D]]
+
[[Category: Sauder JM]]
-
[[Category: Wasserman, S]]
+
[[Category: Smith D]]
-
[[Category: Hydrolase]]
+
[[Category: Wasserman S]]
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
+
-
[[Category: PSI, Protein structure initiative]]
+

Current revision

Crystal structure of the probable dipeptidase PvdM from Pseudomonas aeruginosa

PDB ID 3b40

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3b40"
Personal tools