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3btp

From Proteopedia

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[[Image:3btp.png|left|200px]]
 
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==Crystal structure of Agrobacterium tumefaciens VirE2 in complex with its chaperone VirE1: a novel fold and implications for DNA binding==
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The line below this paragraph, containing "STRUCTURE_3btp", creates the "Structure Box" on the page.
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<StructureSection load='3btp' size='340' side='right'caption='[[3btp]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3btp]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_fabrum_str._C58 Agrobacterium fabrum str. C58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BTP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BTP FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NH4:AMMONIUM+ION'>NH4</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
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{{STRUCTURE_3btp| PDB=3btp | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3btp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3btp OCA], [https://pdbe.org/3btp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3btp RCSB], [https://www.ebi.ac.uk/pdbsum/3btp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3btp ProSAT]</span></td></tr>
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</table>
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===Crystal structure of Agrobacterium tumefaciens VirE2 in complex with its chaperone VirE1: a novel fold and implications for DNA binding===
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== Function ==
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[https://www.uniprot.org/uniprot/VIRE2_AGRFC VIRE2_AGRFC] Involved in DNA transformation; mediates the nuclear uptake of single-stranded DNA copies of the transferred DNA (T-DNA) element. Binds single-stranded but not double-stranded DNA regardless of nucleotide sequence composition.<ref>PMID:12124400</ref> <ref>PMID:17784072</ref> <ref>PMID:8637884</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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(as it appears on PubMed at http://www.pubmed.gov), where 18678909 is the PubMed ID number.
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bt/3btp_consurf.spt"</scriptWhenChecked>
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{{ABSTRACT_PUBMED_18678909}}
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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==About this Structure==
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</jmolCheckbox>
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[[3btp]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens_str. Agrobacterium tumefaciens str.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BTP OCA].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3btp ConSurf].
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<div style="clear:both"></div>
==See Also==
==See Also==
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*[[DNA-binding protein VirE2 from Agrobacterium tumefaciens complexed with chaperone VirE1|DNA-binding protein VirE2 from Agrobacterium tumefaciens complexed with chaperone VirE1]]
 
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*[[HIV Protease Inhibitor Resistance Profile|HIV Protease Inhibitor Resistance Profile]]
 
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*[[Interactive 3D Complements in Proteopedia|Interactive 3D Complements in Proteopedia]]
 
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*[[Main Page Test|Main Page Test]]
 
*[[VirE1-VirE2|VirE1-VirE2]]
*[[VirE1-VirE2|VirE1-VirE2]]
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== References ==
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==Reference==
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<references/>
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<ref group="xtra">PMID:018678909</ref><references group="xtra"/>
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__TOC__
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[[Category: Agrobacterium tumefaciens str.]]
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</StructureSection>
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[[Category: Albeck, S.]]
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[[Category: Agrobacterium fabrum str. C58]]
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[[Category: Dym, O.]]
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[[Category: Large Structures]]
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[[Category: Elbaum, M.]]
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[[Category: Albeck S]]
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[[Category: ISPC, Israel Structural Proteomics Center.]]
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[[Category: Dym O]]
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[[Category: Unger, T.]]
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[[Category: Elbaum M]]
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[[Category: Chaperone]]
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[[Category: Unger T]]
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[[Category: Crown gall tumor]]
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[[Category: Dna binding protein]]
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[[Category: Dna-binding]]
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[[Category: ISPC]]
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[[Category: Israel Structural Proteomics Center]]
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[[Category: Novel fold]]
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[[Category: Secreted]]
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[[Category: Structural genomic]]
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[[Category: Tim barrel]]
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[[Category: Unique topology]]
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[[Category: Virulence]]
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Current revision

Crystal structure of Agrobacterium tumefaciens VirE2 in complex with its chaperone VirE1: a novel fold and implications for DNA binding

PDB ID 3btp

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