This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3c7m

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:33, 21 February 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3c7m.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of reduced DsbL==
-
The line below this paragraph, containing "STRUCTURE_3c7m", creates the "Structure Box" on the page.
+
<StructureSection load='3c7m' size='340' side='right'caption='[[3c7m]], [[Resolution|resolution]] 1.55&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3c7m]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_CFT073 Escherichia coli CFT073]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C7M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C7M FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.55&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
-
{{STRUCTURE_3c7m| PDB=3c7m | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c7m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c7m OCA], [https://pdbe.org/3c7m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c7m RCSB], [https://www.ebi.ac.uk/pdbsum/3c7m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c7m ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/DSBL_ECOL6 DSBL_ECOL6] Involved in disulfide-bond formation. Acts by transferring its disulfide bond to other proteins. Part of a redox system composed of DsbI and DsbL that mediates formation of an essential disulfide bond in AssT.<ref>PMID:18565543</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c7/3c7m_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3c7m ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal structure of reduced DsbL===
+
==See Also==
-
 
+
*[[Thiol:disulfide interchange protein 3D structures|Thiol:disulfide interchange protein 3D structures]]
-
 
+
== References ==
-
<!--
+
<references/>
-
The line below this paragraph, {{ABSTRACT_PUBMED_18565543}}, adds the Publication Abstract to the page
+
__TOC__
-
(as it appears on PubMed at http://www.pubmed.gov), where 18565543 is the PubMed ID number.
+
</StructureSection>
-
-->
+
[[Category: Escherichia coli CFT073]]
-
{{ABSTRACT_PUBMED_18565543}}
+
[[Category: Large Structures]]
-
 
+
[[Category: Capitani G]]
-
==About this Structure==
+
[[Category: Glockshuber R]]
-
3C7M is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C7M OCA].
+
[[Category: Grimshaw JPA]]
-
 
+
[[Category: Grutter MG]]
-
==Reference==
+
[[Category: Stirnimann CU]]
-
DsbL and DsbI form a specific dithiol oxidase system for periplasmic arylsulfate sulfotransferase in uropathogenic Escherichia coli., Grimshaw JP, Stirnimann CU, Brozzo MS, Malojcic G, Grutter MG, Capitani G, Glockshuber R, J Mol Biol. 2008 Jul 18;380(4):667-80. Epub 2008 May 20. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18565543 18565543]
+
-
[[Category: Escherichia coli]]
+
-
[[Category: Single protein]]
+
-
[[Category: Capitani, G.]]
+
-
[[Category: Glockshuber, R.]]
+
-
[[Category: Grimshaw, J P.A.]]
+
-
[[Category: Grutter, M G.]]
+
-
[[Category: Stirnimann, C U.]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Periplasm]]
+
-
[[Category: Redox protein]]
+
-
[[Category: Redox-active center]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 16 09:19:00 2008''
+

Current revision

Crystal structure of reduced DsbL

PDB ID 3c7m

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools