This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3cdx

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:34, 21 February 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3cdx.png|left|200px]]
 
-
<!--
+
==Crystal structure of succinylglutamatedesuccinylase/aspartoacylase from Rhodobacter sphaeroides==
-
The line below this paragraph, containing "STRUCTURE_3cdx", creates the "Structure Box" on the page.
+
<StructureSection load='3cdx' size='340' side='right'caption='[[3cdx]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3cdx]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Cereibacter_sphaeroides_2.4.1 Cereibacter sphaeroides 2.4.1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CDX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CDX FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-
{{STRUCTURE_3cdx| PDB=3cdx | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cdx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cdx OCA], [https://pdbe.org/3cdx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cdx RCSB], [https://www.ebi.ac.uk/pdbsum/3cdx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cdx ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3cdx TOPSAN]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q3HKK3_CERS4 Q3HKK3_CERS4]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cd/3cdx_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cdx ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal structure of succinylglutamatedesuccinylase/aspartoacylase from Rhodobacter sphaeroides===
+
==See Also==
-
 
+
*[[Aspartoacylase 3D structures|Aspartoacylase 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
3CDX is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Rhodobacter_sphaeroides_2.4.1 Rhodobacter sphaeroides 2.4.1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CDX OCA].
+
[[Category: Cereibacter sphaeroides 2 4.1]]
-
[[Category: Rhodobacter sphaeroides 2 4.1]]
+
[[Category: Large Structures]]
-
[[Category: Single protein]]
+
[[Category: Almo SC]]
-
[[Category: Almo, S C.]]
+
[[Category: Bain KT]]
-
[[Category: Bain, K T.]]
+
[[Category: Bonanno JB]]
-
[[Category: Bonanno, J B.]]
+
[[Category: Burley SK]]
-
[[Category: Burley, S K.]]
+
[[Category: Iizuka M]]
-
[[Category: Iizuka, M.]]
+
[[Category: Patterson K]]
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
[[Category: Rutter M]]
-
[[Category: Patterson, K.]]
+
[[Category: Sauder JM]]
-
[[Category: Rutter, M.]]
+
[[Category: Smith D]]
-
[[Category: Sauder, J M.]]
+
[[Category: Wasserman S]]
-
[[Category: Smith, D.]]
+
-
[[Category: Wasserman, S.]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: New york structural genomix research consortium]]
+
-
[[Category: Nysgxrc]]
+
-
[[Category: Plasmid]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Sep 29 07:08:48 2008''
+

Current revision

Crystal structure of succinylglutamatedesuccinylase/aspartoacylase from Rhodobacter sphaeroides

PDB ID 3cdx

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3cdx"
Personal tools