This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3cfy
From Proteopedia
(Difference between revisions)
| (6 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | {{STRUCTURE_3cfy| PDB=3cfy | SCENE= }} | ||
| - | ===Crystal structure of signal receiver domain of putative Luxo repressor protein from Vibrio parahaemolyticus=== | ||
| - | == | + | ==Crystal structure of signal receiver domain of putative Luxo repressor protein from Vibrio parahaemolyticus== |
| - | [[3cfy]] is a 1 chain structure with sequence from [ | + | <StructureSection load='3cfy' size='340' side='right'caption='[[3cfy]], [[Resolution|resolution]] 2.50Å' scene=''> |
| - | + | == Structural highlights == | |
| - | == | + | <table><tr><td colspan='2'>[[3cfy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_RIMD_2210633 Vibrio parahaemolyticus RIMD 2210633]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CFY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CFY FirstGlance]. <br> |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5Å</td></tr> | |
| - | [[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cfy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cfy OCA], [https://pdbe.org/3cfy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cfy RCSB], [https://www.ebi.ac.uk/pdbsum/3cfy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cfy ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3cfy TOPSAN]</span></td></tr> |
| - | [ | + | </table> |
| - | [ | + | == Function == |
| - | [ | + | [https://www.uniprot.org/uniprot/Q87PN2_VIBPA Q87PN2_VIBPA] |
| - | [ | + | == Evolutionary Conservation == |
| - | [ | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [ | + | Check<jmol> |
| - | + | <jmolCheckbox> | |
| - | [ | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cf/3cfy_consurf.spt"</scriptWhenChecked> |
| - | [[ | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [ | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[ | + | </jmolCheckbox> |
| - | [ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cfy ConSurf]. |
| - | + | <div style="clear:both"></div> | |
| - | [[Category: | + | __TOC__ |
| - | [[Category: | + | </StructureSection> |
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: | + | [[Category: Vibrio parahaemolyticus RIMD 2210633]] |
| - | [[Category: | + | [[Category: Almo SC]] |
| - | [[Category: | + | [[Category: Burley SK]] |
| - | [[Category: | + | [[Category: Fong R]] |
| - | [[Category: | + | [[Category: Freeman J]] |
| - | [[Category: | + | [[Category: Groshong C]] |
| - | [[Category: | + | [[Category: Iizuka M]] |
| - | [[Category: | + | [[Category: Patskovsky Y]] |
| - | [[Category: | + | [[Category: Ramagopal UA]] |
| - | [[Category: | + | [[Category: Sauder JM]] |
| + | [[Category: Smith D]] | ||
| + | [[Category: Wasserman SR]] | ||
Current revision
Crystal structure of signal receiver domain of putative Luxo repressor protein from Vibrio parahaemolyticus
| |||||||||||
