This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3cmg
From Proteopedia
(Difference between revisions)
| (3 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| + | |||
==Crystal structure of putative beta-galactosidase from Bacteroides fragilis== | ==Crystal structure of putative beta-galactosidase from Bacteroides fragilis== | ||
| - | <StructureSection load='3cmg' size='340' side='right' caption='[[3cmg]], [[Resolution|resolution]] 1.90Å' scene=''> | + | <StructureSection load='3cmg' size='340' side='right'caption='[[3cmg]], [[Resolution|resolution]] 1.90Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[3cmg]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[3cmg]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteroides_fragilis_NCTC_9343 Bacteroides fragilis NCTC 9343]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CMG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CMG FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9Å</td></tr> |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cmg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cmg OCA], [https://pdbe.org/3cmg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cmg RCSB], [https://www.ebi.ac.uk/pdbsum/3cmg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cmg ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3cmg TOPSAN]</span></td></tr> |
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/Q5LIC7_BACFN Q5LIC7_BACFN] | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cm/3cmg_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cm/3cmg_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
| Line 19: | Line 22: | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Bacteroides fragilis NCTC 9343]] |
| - | [[Category: Almo | + | [[Category: Large Structures]] |
| - | [[Category: Burley | + | [[Category: Almo SC]] |
| - | [[Category: Gheyi | + | [[Category: Burley SK]] |
| - | [[Category: Hu | + | [[Category: Gheyi T]] |
| - | [[Category: Maletic | + | [[Category: Hu S]] |
| - | + | [[Category: Maletic M]] | |
| - | [[Category: Ramagopal | + | [[Category: Ramagopal UA]] |
| - | [[Category: Rutter | + | [[Category: Rutter M]] |
| - | [[Category: Sauder | + | [[Category: Sauder JM]] |
| - | [[Category: Toro | + | [[Category: Toro R]] |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Crystal structure of putative beta-galactosidase from Bacteroides fragilis
| |||||||||||
Categories: Bacteroides fragilis NCTC 9343 | Large Structures | Almo SC | Burley SK | Gheyi T | Hu S | Maletic M | Ramagopal UA | Rutter M | Sauder JM | Toro R
