This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3cmg

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:36, 21 February 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3cmg.png|left|200px]]
 
-
<!--
+
==Crystal structure of putative beta-galactosidase from Bacteroides fragilis==
-
The line below this paragraph, containing "STRUCTURE_3cmg", creates the "Structure Box" on the page.
+
<StructureSection load='3cmg' size='340' side='right'caption='[[3cmg]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3cmg]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteroides_fragilis_NCTC_9343 Bacteroides fragilis NCTC 9343]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CMG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CMG FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
{{STRUCTURE_3cmg| PDB=3cmg | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cmg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cmg OCA], [https://pdbe.org/3cmg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cmg RCSB], [https://www.ebi.ac.uk/pdbsum/3cmg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cmg ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3cmg TOPSAN]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of putative beta-galactosidase from Bacteroides fragilis===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q5LIC7_BACFN Q5LIC7_BACFN]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
3CMG is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Bacteroides_fragilis_nctc_9343 Bacteroides fragilis nctc 9343]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CMG OCA].
+
Check<jmol>
-
[[Category: Bacteroides fragilis nctc 9343]]
+
<jmolCheckbox>
-
[[Category: Almo, S C.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cm/3cmg_consurf.spt"</scriptWhenChecked>
-
[[Category: Burley, S K.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Gheyi, T.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Hu, S.]]
+
</jmolCheckbox>
-
[[Category: Maletic, M.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cmg ConSurf].
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
<div style="clear:both"></div>
-
[[Category: Ramagopal, U A.]]
+
__TOC__
-
[[Category: Rutter, M.]]
+
</StructureSection>
-
[[Category: Sauder, J M.]]
+
[[Category: Bacteroides fragilis NCTC 9343]]
-
[[Category: Toro, R.]]
+
[[Category: Large Structures]]
-
[[Category: Hydrolase]]
+
[[Category: Almo SC]]
-
[[Category: New york structural genomix research consortium]]
+
[[Category: Burley SK]]
-
[[Category: Nysgxrc]]
+
[[Category: Gheyi T]]
-
[[Category: Protein structure initiative]]
+
[[Category: Hu S]]
-
[[Category: Psi-2]]
+
[[Category: Maletic M]]
-
[[Category: Putative beta-galactosidase]]
+
[[Category: Ramagopal UA]]
-
[[Category: Structural genomic]]
+
[[Category: Rutter M]]
-
 
+
[[Category: Sauder JM]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 10:55:02 2008''
+
[[Category: Toro R]]

Current revision

Crystal structure of putative beta-galactosidase from Bacteroides fragilis

PDB ID 3cmg

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools