This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3csb

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:37, 21 February 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3csb.jpg|left|200px]]
 
-
<!--
+
==Crystal Structure of Monobody YSX1/Maltose Binding Protein Fusion Complex==
-
The line below this paragraph, containing "STRUCTURE_3csb", creates the "Structure Box" on the page.
+
<StructureSection load='3csb' size='340' side='right'caption='[[3csb]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3csb]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CSB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CSB FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.999&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
-
{{STRUCTURE_3csb| PDB=3csb | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3csb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3csb OCA], [https://pdbe.org/3csb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3csb RCSB], [https://www.ebi.ac.uk/pdbsum/3csb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3csb ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal Structure of Monobody YSX1/Maltose Binding Protein Fusion Complex===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/MALE_ECOLI MALE_ECOLI] Involved in the high-affinity maltose membrane transport system MalEFGK. Initial receptor for the active transport of and chemotaxis toward maltooligosaccharides.
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_18602117}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 18602117 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cs/3csb_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_18602117}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
3CSB is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli,_synthetic Escherichia coli, synthetic]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CSB OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3csb ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
A dominant conformational role for amino acid diversity in minimalist protein-protein interfaces., Gilbreth RN, Esaki K, Koide A, Sidhu SS, Koide S, J Mol Biol. 2008 Aug 29;381(2):407-18. Epub 2008 Jun 12. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18602117 18602117]
+
</StructureSection>
-
[[Category: Escherichia coli, synthetic]]
+
[[Category: Escherichia coli]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Gilbreth, R N.]]
+
[[Category: Synthetic construct]]
-
[[Category: Koide, S.]]
+
[[Category: Gilbreth RN]]
-
[[Category: Antibody mimic]]
+
[[Category: Koide S]]
-
[[Category: De novo protein]]
+
-
[[Category: Engineered binding protein]]
+
-
[[Category: Minimalist protein interface]]
+
-
[[Category: Sugar binding protein]]
+
-
[[Category: Synthetic protein interface]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 23 11:49:21 2008''
+

Current revision

Crystal Structure of Monobody YSX1/Maltose Binding Protein Fusion Complex

PDB ID 3csb

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools