This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3cvt

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:38, 21 February 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3cvt.png|left|200px]]
 
-
<!--
+
==Crystal Structure of an AlkA Host/Guest Complex 8oxoGuanine:Cytosine Base Pair==
-
The line below this paragraph, containing "STRUCTURE_3cvt", creates the "Structure Box" on the page.
+
<StructureSection load='3cvt' size='340' side='right'caption='[[3cvt]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3cvt]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CVT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CVT FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=8OG:8-OXO-2-DEOXY-GUANOSINE-5-MONOPHOSPHATE'>8OG</scene></td></tr>
-
{{STRUCTURE_3cvt| PDB=3cvt | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cvt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cvt OCA], [https://pdbe.org/3cvt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cvt RCSB], [https://www.ebi.ac.uk/pdbsum/3cvt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cvt ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/3MG2_ECOLI 3MG2_ECOLI] Hydrolysis of the deoxyribose N-glycosidic bond to excise 3-methyladenine, 3-methylguanine, 7-methylguanine, O2-methylthymine, and O2-methylcytosine from the damaged DNA polymer formed by alkylation lesions.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cv/3cvt_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cvt ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal Structure of an AlkA Host/Guest Complex 8oxoGuanine:Cytosine Base Pair===
+
==See Also==
-
 
+
*[[DNA glycosylase 3D structures|DNA glycosylase 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_18682218}}, adds the Publication Abstract to the page
+
-
(as it appears on PubMed at http://www.pubmed.gov), where 18682218 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_18682218}}
+
-
 
+
-
==About this Structure==
+
-
3CVT is a 8 chains structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CVT OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:18682218</ref><references group="xtra"/>
+
-
[[Category: DNA-3-methyladenine glycosylase II]]
+
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
-
[[Category: Bowman, B R.]]
+
[[Category: Large Structures]]
-
[[Category: Lee, S.]]
+
[[Category: Bowman BR]]
-
[[Category: Verdine, G L.]]
+
[[Category: Lee S]]
-
[[Category: Wang, S.]]
+
[[Category: Verdine GL]]
-
[[Category: 8oxoguanine]]
+
[[Category: Wang S]]
-
[[Category: Alka]]
+
-
[[Category: Dna damage]]
+
-
[[Category: Dna repair]]
+
-
[[Category: Dna structure]]
+
-
[[Category: Host/guest complex]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Hydrolase/dna complex]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 21:59:59 2009''
+

Current revision

Crystal Structure of an AlkA Host/Guest Complex 8oxoGuanine:Cytosine Base Pair

PDB ID 3cvt

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3cvt"
Personal tools