This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3cyj
From Proteopedia
(Difference between revisions)
| (3 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| + | |||
==Crystal structure of a mandelate racemase/muconate lactonizing enzyme-like protein from Rubrobacter xylanophilus== | ==Crystal structure of a mandelate racemase/muconate lactonizing enzyme-like protein from Rubrobacter xylanophilus== | ||
| - | <StructureSection load='3cyj' size='340' side='right' caption='[[3cyj]], [[Resolution|resolution]] 2.30Å' scene=''> | + | <StructureSection load='3cyj' size='340' side='right'caption='[[3cyj]], [[Resolution|resolution]] 2.30Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[3cyj]] is a 4 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[3cyj]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Rubrobacter_xylanophilus_DSM_9941 Rubrobacter xylanophilus DSM 9941]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CYJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CYJ FirstGlance]. <br> |
| - | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3Å</td></tr> |
| - | <tr id=' | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cyj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cyj OCA], [https://pdbe.org/3cyj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cyj RCSB], [https://www.ebi.ac.uk/pdbsum/3cyj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cyj ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3cyj TOPSAN]</span></td></tr> |
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/Q1ASJ4_RUBXD Q1ASJ4_RUBXD] | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cy/3cyj_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cy/3cyj_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
| Line 19: | Line 22: | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: Almo | + | [[Category: Rubrobacter xylanophilus DSM 9941]] |
| - | [[Category: Bain | + | [[Category: Almo SC]] |
| - | [[Category: Bonanno | + | [[Category: Bain KT]] |
| - | [[Category: Bravo | + | [[Category: Bonanno JB]] |
| - | [[Category: Burley | + | [[Category: Bravo J]] |
| - | [[Category: Freeman | + | [[Category: Burley SK]] |
| - | + | [[Category: Freeman J]] | |
| - | [[Category: Sauder | + | [[Category: Sauder JM]] |
| - | [[Category: Smith | + | [[Category: Smith D]] |
| - | [[Category: Wasserman | + | [[Category: Wasserman S]] |
| - | [[Category: Zhang | + | [[Category: Zhang F]] |
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Crystal structure of a mandelate racemase/muconate lactonizing enzyme-like protein from Rubrobacter xylanophilus
| |||||||||||

