This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3dh4

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:41, 21 February 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3dh4.jpg|left|200px]]
 
-
<!--
+
==Crystal Structure of Sodium/Sugar symporter with bound Galactose from vibrio parahaemolyticus==
-
The line below this paragraph, containing "STRUCTURE_3dh4", creates the "Structure Box" on the page.
+
<StructureSection load='3dh4' size='340' side='right'caption='[[3dh4]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3dh4]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_parahaemolyticus Vibrio parahaemolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DH4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DH4 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ER3:ERBIUM+(III)+ION'>ER3</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
{{STRUCTURE_3dh4| PDB=3dh4 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dh4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dh4 OCA], [https://pdbe.org/3dh4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dh4 RCSB], [https://www.ebi.ac.uk/pdbsum/3dh4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dh4 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/SGLT_VIBPH SGLT_VIBPH] Actively transports glucose into cells by Na(+) cotransport.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dh/3dh4_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dh4 ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal Structure of Sodium/Sugar symporter with bound Galactose from vibrio parahaemolyticus===
+
==See Also==
-
 
+
*[[Symporter 3D structures|Symporter 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_18599740}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 18599740 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_18599740}}
+
-
 
+
-
==About this Structure==
+
-
3DH4 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus Vibrio parahaemolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DH4 OCA].
+
-
 
+
-
==Reference==
+
-
The Crystal Structure of a Sodium Galactose Transporter Reveals Mechanistic Insights into Na+/Sugar Symport., Faham S, Watanabe A, Besserer GM, Cascio D, Specht A, Hirayama BA, Wright EM, Abramson J, Science. 2008 Jul 3. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18599740 18599740]
+
-
[[Category: Single protein]]
+
[[Category: Vibrio parahaemolyticus]]
[[Category: Vibrio parahaemolyticus]]
-
[[Category: Abramson, J.]]
+
[[Category: Abramson J]]
-
[[Category: Cascio, D.]]
+
[[Category: Cascio D]]
-
[[Category: Faham, S.]]
+
[[Category: Faham S]]
-
[[Category: Ion transport]]
+
-
[[Category: Membrane]]
+
-
[[Category: Membrane protein]]
+
-
[[Category: Sglt]]
+
-
[[Category: Sodium]]
+
-
[[Category: Sodium transport]]
+
-
[[Category: Sugar transport]]
+
-
[[Category: Symport]]
+
-
[[Category: Symporter]]
+
-
[[Category: Transmembrane]]
+
-
[[Category: Transport]]
+
-
[[Category: Transport protein]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Aug 6 13:05:17 2008''
+

Current revision

Crystal Structure of Sodium/Sugar symporter with bound Galactose from vibrio parahaemolyticus

PDB ID 3dh4

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3dh4"
Personal tools