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3dm3

From Proteopedia

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{{Seed}}
 
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[[Image:3dm3.jpg|left|200px]]
 
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==Crystal structure of a domain of a Replication factor A protein, from Methanocaldococcus jannaschii. NorthEast Structural Genomics target MjR118E==
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The line below this paragraph, containing "STRUCTURE_3dm3", creates the "Structure Box" on the page.
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<StructureSection load='3dm3' size='340' side='right'caption='[[3dm3]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3dm3]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DM3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DM3 FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
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{{STRUCTURE_3dm3| PDB=3dm3 | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dm3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dm3 OCA], [https://pdbe.org/3dm3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dm3 RCSB], [https://www.ebi.ac.uk/pdbsum/3dm3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dm3 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/RPA_METJA RPA_METJA] Probably plays an essential for replication of the chromosome, DNA recombination and repair (By similarity).
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dm/3dm3_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dm3 ConSurf].
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<div style="clear:both"></div>
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===Crystal structure of a domain of a Replication factor A protein, from Methanocaldococcus jannaschii. NorthEast Structural Genomics target MjR118E===
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==See Also==
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*[[Single-stranded DNA-binding protein 3D structures|Single-stranded DNA-binding protein 3D structures]]
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__TOC__
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==About this Structure==
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</StructureSection>
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3DM3 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DM3 OCA].
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[[Category: Large Structures]]
[[Category: Methanocaldococcus jannaschii]]
[[Category: Methanocaldococcus jannaschii]]
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[[Category: Single protein]]
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[[Category: Acton TB]]
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[[Category: Acton, T B.]]
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[[Category: Ciccosanti C]]
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[[Category: Ciccosanti, C.]]
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[[Category: Everett JK]]
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[[Category: Everett, J K.]]
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[[Category: Hunt JF]]
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[[Category: Hunt, J F.]]
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[[Category: Janjua H]]
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[[Category: Janjua, H.]]
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[[Category: Maglaqui M]]
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[[Category: Maglaqui, M.]]
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[[Category: Montelione GT]]
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[[Category: Montelione, G T.]]
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[[Category: Nair R]]
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[[Category: NESG, Northeast Structural Genomics Consortium.]]
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[[Category: Rost B]]
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[[Category: Nair, R.]]
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[[Category: Seetharaman J]]
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[[Category: Rost, B.]]
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[[Category: Su M]]
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[[Category: Seetharaman, J.]]
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[[Category: Tong L]]
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[[Category: Su, M.]]
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[[Category: Xiao R]]
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[[Category: Tong, L.]]
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[[Category: Xiao, R.]]
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[[Category: Dna damage]]
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[[Category: Dna recombination and repair]]
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[[Category: Dna repair]]
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[[Category: Dna replication]]
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[[Category: Dna-binding]]
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[[Category: Metal-binding]]
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[[Category: Nesg]]
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[[Category: Northeast structural genomics consortium]]
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[[Category: Probably plays an essential for replication of the chromosome]]
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[[Category: Protein structure initiative]]
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[[Category: Psi-2]]
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[[Category: Replication factor a synonyms rp-a rf-a replication factor a protein 1 single-stranded dna-binding protein]]
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[[Category: Structural genomic]]
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[[Category: Zinc]]
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[[Category: Zinc-finger]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Aug 27 11:31:47 2008''
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Current revision

Crystal structure of a domain of a Replication factor A protein, from Methanocaldococcus jannaschii. NorthEast Structural Genomics target MjR118E

PDB ID 3dm3

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