This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3e79

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:45, 21 February 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3e79.jpg|left|200px]]
 
-
<!--
+
==Structure determination of the cancer-associated Mycoplasma hyorhinis protein Mh-p37==
-
The line below this paragraph, containing "STRUCTURE_3e79", creates the "Structure Box" on the page.
+
<StructureSection load='3e79' size='340' side='right'caption='[[3e79]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3e79]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mesomycoplasma_hyorhinis Mesomycoplasma hyorhinis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E79 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3E79 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=I3C:5-AMINO-2,4,6-TRIIODOBENZENE-1,3-DICARBOXYLIC+ACID'>I3C</scene>, <scene name='pdbligand=TPP:THIAMINE+DIPHOSPHATE'>TPP</scene></td></tr>
-
{{STRUCTURE_3e79| PDB=3e79 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3e79 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e79 OCA], [https://pdbe.org/3e79 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3e79 RCSB], [https://www.ebi.ac.uk/pdbsum/3e79 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3e79 ProSAT]</span></td></tr>
-
 
+
</table>
-
===Structure determination of the cancer-associated Mycoplasma hyorhinis protein Mh-p37===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/P37_MESHY P37_MESHY]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
3E79 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Mycoplasma_hyorhinis Mycoplasma hyorhinis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E79 OCA].
+
Check<jmol>
-
[[Category: Mycoplasma hyorhinis]]
+
<jmolCheckbox>
-
[[Category: Single protein]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e7/3e79_consurf.spt"</scriptWhenChecked>
-
[[Category: Domsic, J.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: McKenna, R.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Reutzel, R.]]
+
</jmolCheckbox>
-
[[Category: Robbins, A H.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3e79 ConSurf].
-
[[Category: Sippel, K H.]]
+
<div style="clear:both"></div>
-
[[Category: Cell membrane]]
+
__TOC__
-
[[Category: Lipoprotein]]
+
</StructureSection>
-
[[Category: Membrane]]
+
[[Category: Large Structures]]
-
[[Category: Mycoplasma]]
+
[[Category: Mesomycoplasma hyorhinis]]
-
[[Category: P37]]
+
[[Category: Domsic J]]
-
[[Category: Palmitate]]
+
[[Category: McKenna R]]
-
[[Category: Tpp]]
+
[[Category: Reutzel R]]
-
[[Category: Tpp binding protein]]
+
[[Category: Robbins AH]]
-
[[Category: Transport]]
+
[[Category: Sippel KH]]
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 22 10:51:17 2008''
+

Current revision

Structure determination of the cancer-associated Mycoplasma hyorhinis protein Mh-p37

PDB ID 3e79

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools