3g1z

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[[Image:3g1z.png|left|200px]]
 
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==Structure of IDP01693/yjeA, a potential t-RNA synthetase from Salmonella typhimurium==
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The line below this paragraph, containing "STRUCTURE_3g1z", creates the "Structure Box" on the page.
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<StructureSection load='3g1z' size='340' side='right'caption='[[3g1z]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3g1z]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium Salmonella enterica subsp. enterica serovar Typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3G1Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3G1Z FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
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{{STRUCTURE_3g1z| PDB=3g1z | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3g1z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3g1z OCA], [https://pdbe.org/3g1z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3g1z RCSB], [https://www.ebi.ac.uk/pdbsum/3g1z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3g1z ProSAT], [https://www.topsan.org/Proteins/CSGID/3g1z TOPSAN]</span></td></tr>
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</table>
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===Structure of IDP01693/yjeA, a potential t-RNA synthetase from Salmonella typhimurium===
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== Function ==
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[https://www.uniprot.org/uniprot/EPMA_SALTY EPMA_SALTY] With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P) on 'Lys-34'. Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta-lysyl moiety is then transferred to the epsilon-amino group of EF-P 'Lys-34' (Probable). Can also use L-alpha-lysine as a substrate, but probably with lower efficiency. Cannot aminoacylate tRNA(Lys) with lysine.[HAMAP-Rule:MF_00174]<ref>PMID:20670890</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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The line below this paragraph, {{ABSTRACT_PUBMED_20670890}}, adds the Publication Abstract to the page
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Check<jmol>
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(as it appears on PubMed at http://www.pubmed.gov), where 20670890 is the PubMed ID number.
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/g1/3g1z_consurf.spt"</scriptWhenChecked>
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{{ABSTRACT_PUBMED_20670890}}
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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==About this Structure==
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</jmolCheckbox>
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[[3g1z]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_typhimurium Salmonella enterica subsp. enterica serovar typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3G1Z OCA].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3g1z ConSurf].
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<div style="clear:both"></div>
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==Reference==
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== References ==
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<ref group="xtra">PMID:020670890</ref><references group="xtra"/>
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<references/>
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[[Category: Lysine--tRNA ligase]]
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__TOC__
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[[Category: Salmonella enterica subsp. enterica serovar typhimurium]]
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</StructureSection>
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[[Category: Anderson, W F.]]
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[[Category: Large Structures]]
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[[Category: CSGID, Center for Structural Genomics of Infectious Diseases.]]
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[[Category: Salmonella enterica subsp. enterica serovar Typhimurium]]
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[[Category: Cuff, M E.]]
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[[Category: Anderson WF]]
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[[Category: Edwards, A M.]]
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[[Category: Cuff ME]]
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[[Category: Evdokimova, E.]]
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[[Category: Edwards AM]]
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[[Category: Kudritska, M.]]
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[[Category: Evdokimova E]]
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[[Category: Savchenko, A.]]
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[[Category: Kudritska M]]
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[[Category: Singer, A U.]]
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[[Category: Savchenko A]]
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[[Category: Aminoacyl-trna synthetase]]
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[[Category: Singer AU]]
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[[Category: Atp-binding]]
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[[Category: Center for structural genomics of infectious disease]]
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[[Category: Csgid]]
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[[Category: Drug target]]
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[[Category: Ligase]]
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[[Category: Nucleotide]]
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[[Category: Nucleotide-binding]]
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[[Category: Protein biosynthesis]]
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[[Category: Salmonella typhimurium]]
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[[Category: Structural genomic]]
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[[Category: T-rna synthetase]]
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Current revision

Structure of IDP01693/yjeA, a potential t-RNA synthetase from Salmonella typhimurium

PDB ID 3g1z

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Proteopedia Page Contributors and Editors (what is this?)

OCA

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