This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3gob

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3gob" [edit=sysop:move=sysop])
Current revision (09:55, 21 February 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3gob.png|left|200px]]
 
-
<!--
+
==Crystal Structure of Dicamba Monooxygenase with Non-heme Cobalt and DCSA==
-
The line below this paragraph, containing "STRUCTURE_3gob", creates the "Structure Box" on the page.
+
<StructureSection load='3gob' size='340' side='right'caption='[[3gob]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3gob]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Stenotrophomonas_maltophilia Stenotrophomonas maltophilia]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GOB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GOB FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=HXX:3,6-DICHLORO-2-HYDROXYBENZOIC+ACID'>HXX</scene></td></tr>
-
{{STRUCTURE_3gob| PDB=3gob | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gob FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gob OCA], [https://pdbe.org/3gob PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gob RCSB], [https://www.ebi.ac.uk/pdbsum/3gob PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gob ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal Structure of Dicamba Monooxygenase with Non-heme Cobalt and DCSA===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/DDMC_STEMA DDMC_STEMA] Component of the dicamba O-demethylase multicomponent enzyme system involved in the degradation of the herbicide dicamba (PubMed:15855162, PubMed:15820213, PubMed:16535584). In vitro, catalyzes the O-demethylation of 2-methoxy-3,6-dichlorobenzoic acid (dicamba) to yield 3,6-dichlorosalicylic acid (DCSA) via an exocyclic monooxygenation (PubMed:15855162, PubMed:15820213, PubMed:16535584, PubMed:19616009).<ref>PMID:15820213</ref> <ref>PMID:15855162</ref> <ref>PMID:16535584</ref> <ref>PMID:19616009</ref>
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_19616009}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 19616009 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/go/3gob_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_19616009}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
[[3gob]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Stenotrophomonas_maltophilia Stenotrophomonas maltophilia]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GOB OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gob ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
== References ==
-
<ref group="xtra">PMID:019616009</ref><references group="xtra"/>
+
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Stenotrophomonas maltophilia]]
[[Category: Stenotrophomonas maltophilia]]
-
[[Category: Brown, G R.]]
+
[[Category: Brown GR]]
-
[[Category: Moshiri, F.]]
+
[[Category: Moshiri F]]
-
[[Category: Qi, Y.]]
+
[[Category: Qi Y]]
-
[[Category: Rydel, T J.]]
+
[[Category: Rydel TJ]]
-
[[Category: Sturman, E J.]]
+
[[Category: Sturman EJ]]
-
[[Category: Electron transport]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Rieske non-heme iron oxygenase]]
+

Current revision

Crystal Structure of Dicamba Monooxygenase with Non-heme Cobalt and DCSA

PDB ID 3gob

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3gob"
Personal tools