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3gox

From Proteopedia

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(New page: 200px <!-- The line below this paragraph, containing "STRUCTURE_3gox", creates the "Structure Box" on the page. You may change the PDB parameter (which sets the PD...)
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[[Image:3gox.png|left|200px]]
 
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==Crystal structure of the beta-beta-alpha-Me type II restriction endonuclease Hpy99I in the absence of EDTA==
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The line below this paragraph, containing "STRUCTURE_3gox", creates the "Structure Box" on the page.
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<StructureSection load='3gox' size='340' side='right'caption='[[3gox]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3gox]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicobacter_pylori_J99 Helicobacter pylori J99]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GOX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GOX FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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{{STRUCTURE_3gox| PDB=3gox | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gox FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gox OCA], [https://pdbe.org/3gox PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gox RCSB], [https://www.ebi.ac.uk/pdbsum/3gox PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gox ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q9ZL26_HELPJ Q9ZL26_HELPJ]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/go/3gox_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gox ConSurf].
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<div style="clear:both"></div>
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===Crystal structure of the beta-beta-alpha-Me type II restriction endonuclease Hpy99I in the absence of EDTA===
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==See Also==
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*[[Endonuclease 3D structures|Endonuclease 3D structures]]
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__TOC__
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<!--
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</StructureSection>
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The line below this paragraph, {{ABSTRACT_PUBMED_19380375}}, adds the Publication Abstract to the page
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[[Category: Helicobacter pylori J99]]
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(as it appears on PubMed at http://www.pubmed.gov), where 19380375 is the PubMed ID number.
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[[Category: Large Structures]]
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[[Category: Bochtler M]]
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{{ABSTRACT_PUBMED_19380375}}
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[[Category: Czapinska H]]
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[[Category: Sokolowska M]]
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==About this Structure==
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[[3gox]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GOX OCA].
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==Reference==
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<ref group="xtra">PMID:019380375</ref><ref group="xtra">PMID:017873859</ref><ref group="xtra">PMID:009665136</ref><ref group="xtra">PMID:019351152</ref><references group="xtra"/>
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[[Category: Helicobacter pylori]]
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[[Category: Bochtler, M.]]
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[[Category: Czapinska, H.]]
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[[Category: Sokolowska, M.]]
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[[Category: Endonuclease-dna complex]]
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[[Category: Hpy99i]]
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[[Category: Hydrolase-dna complex]]
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[[Category: Pseudopalindrome]]
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[[Category: Restriction enzyme]]
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Current revision

Crystal structure of the beta-beta-alpha-Me type II restriction endonuclease Hpy99I in the absence of EDTA

PDB ID 3gox

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